Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   FOZ74_RS07915 Genome accession   NZ_CP042344
Coordinates   1625308..1626840 (-) Length   510 a.a.
NCBI ID   WP_146912551.1    Uniprot ID   A0A5B8RW48
Organism   Comamonas flocculans strain NLF-7-7     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1620308..1631840
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOZ74_RS07880 (FOZ74_07880) - 1620615..1621643 (+) 1029 WP_186764671.1 chromosome condensation regulator -
  FOZ74_RS07885 (FOZ74_07885) - 1621657..1622385 (-) 729 WP_146912546.1 LrgB family protein -
  FOZ74_RS07890 (FOZ74_07890) - 1622389..1622748 (-) 360 WP_146912547.1 CidA/LrgA family protein -
  FOZ74_RS07895 (FOZ74_07895) - 1622777..1623172 (-) 396 WP_146912548.1 tautomerase -
  FOZ74_RS07900 (FOZ74_07900) - 1623286..1623801 (-) 516 WP_222434191.1 DUF305 domain-containing protein -
  FOZ74_RS07905 (FOZ74_07905) - 1623896..1624258 (-) 363 WP_146912549.1 TfoX/Sxy family protein -
  FOZ74_RS07910 (FOZ74_07910) - 1624498..1625217 (-) 720 WP_146912550.1 hypothetical protein -
  FOZ74_RS07915 (FOZ74_07915) comM 1625308..1626840 (-) 1533 WP_146912551.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  FOZ74_RS07920 (FOZ74_07920) glcE 1627063..1628160 (+) 1098 WP_146912552.1 glycolate oxidase subunit GlcE -
  FOZ74_RS07925 (FOZ74_07925) glcF 1628164..1629402 (+) 1239 WP_146912553.1 glycolate oxidase subunit GlcF -
  FOZ74_RS07930 (FOZ74_07930) - 1629399..1630100 (+) 702 WP_146912554.1 ProQ/FinO family protein -
  FOZ74_RS07935 (FOZ74_07935) - 1630285..1630866 (-) 582 WP_186764672.1 hypothetical protein -

Sequence

Protein


Download         Length: 510 a.a.        Molecular weight: 53120.77 Da        Isoelectric Point: 8.2094

>NTDB_id=377187 FOZ74_RS07915 WP_146912551.1 1625308..1626840(-) (comM) [Comamonas flocculans strain NLF-7-7]
MSLALVQSRALLGLAAPAVTVEVHLANGLPAFTLVGLADVEVKEARERVRAAILNSGLEFPSNKRITVNLAPADLPKDSG
RFDLPIALGLLAASGQIAADRLAGWEFAGELSLSGQLRSVRGALATALALRGQGEAARLVLPLDSAREAALVPDAPIYGA
EHLLDVVAQFLPPGAEGQAGEPSGWQRVLPAPVADAEPGADLADVKGQAAARRALEIAAAGGHGLLLAGPPGSGKSMLAQ
RFASILPPMTVQEALESAALASLAGRFTPARWMRRPTGSPHHSASAVALVGGGSPPRPGEISLAHHGVLFLDEFPEFARS
ALEALREPLESGHITIARAAQRAEFPARFQLVAAMNPCPCGFAGSRQRACRCTPEQIARYQGKLSGPLLDRIDLHVEVPH
LPAEELLDAPPGESSAAVRARVVAARQRAIARQGQPNQALSGQALQDAAGLDEAASRFLQTAATRLAWSARATHRALKVA
RTIADLGGSEHVGVAHVGEAIQYRRVLSAK

Nucleotide


Download         Length: 1533 bp        

>NTDB_id=377187 FOZ74_RS07915 WP_146912551.1 1625308..1626840(-) (comM) [Comamonas flocculans strain NLF-7-7]
ATGAGCCTTGCCCTGGTCCAAAGCCGCGCCCTGCTGGGCCTGGCCGCACCCGCCGTCACCGTGGAGGTGCACCTGGCCAA
CGGCCTGCCGGCCTTCACGCTGGTGGGCCTGGCCGACGTGGAAGTGAAGGAAGCGCGCGAGCGCGTGCGCGCGGCCATCC
TCAACAGCGGGCTGGAGTTCCCGTCGAACAAGCGCATCACGGTCAACCTGGCGCCGGCCGACCTGCCCAAGGACTCCGGG
CGCTTCGACCTGCCGATCGCGCTGGGCCTGCTGGCGGCCAGCGGGCAGATAGCCGCCGACCGGCTGGCGGGCTGGGAGTT
TGCCGGCGAGCTCTCGCTGTCCGGCCAGTTGCGCAGCGTGCGCGGCGCGCTGGCCACCGCGCTGGCGCTGCGCGGCCAGG
GTGAGGCGGCGCGCCTGGTGCTGCCGCTGGACAGCGCCCGCGAGGCCGCGCTGGTGCCCGACGCGCCAATCTACGGCGCC
GAGCACCTGCTGGACGTGGTGGCGCAGTTCCTGCCGCCCGGCGCCGAGGGCCAGGCGGGCGAGCCCAGCGGCTGGCAGCG
CGTGCTGCCCGCGCCCGTCGCCGACGCCGAGCCCGGCGCGGATCTGGCCGACGTCAAGGGCCAGGCCGCCGCCCGCCGCG
CGCTGGAGATCGCCGCCGCCGGCGGCCACGGGCTGCTGCTGGCCGGCCCGCCCGGCTCGGGCAAGTCCATGCTGGCGCAG
CGCTTCGCCTCCATCCTGCCGCCGATGACGGTGCAGGAGGCGCTGGAGAGCGCGGCGCTGGCCAGCCTGGCCGGGCGCTT
CACGCCCGCGCGCTGGATGCGCCGGCCCACCGGCAGCCCGCACCACAGCGCCAGCGCGGTGGCGCTGGTGGGCGGCGGTT
CGCCCCCGCGGCCGGGCGAGATATCGCTGGCGCACCACGGCGTGCTGTTTCTGGACGAATTCCCCGAGTTCGCGCGCAGC
GCGCTCGAAGCCCTGCGCGAGCCGCTGGAAAGCGGCCACATCACCATCGCGCGCGCCGCGCAGCGCGCCGAATTCCCGGC
GCGCTTTCAGCTCGTCGCGGCGATGAACCCCTGCCCCTGCGGCTTCGCCGGTTCGCGCCAGCGCGCCTGCCGCTGCACGC
CCGAGCAGATCGCCCGCTACCAGGGCAAGCTCAGCGGCCCGCTGCTGGACCGCATCGACCTGCACGTGGAAGTGCCGCAC
CTCCCCGCCGAAGAACTGCTGGACGCGCCCCCGGGCGAGAGCAGCGCCGCGGTGCGCGCGCGCGTGGTGGCCGCGCGCCA
GCGTGCCATCGCGCGCCAGGGCCAGCCCAACCAGGCGTTGTCGGGCCAGGCGCTGCAGGACGCGGCCGGCCTGGACGAAG
CCGCGAGCCGCTTCCTGCAGACCGCCGCCACCCGCCTGGCCTGGTCGGCGCGCGCCACCCATCGCGCGCTCAAGGTAGCG
CGCACCATCGCCGACCTGGGCGGCTCTGAGCACGTGGGCGTGGCGCACGTGGGCGAGGCCATCCAGTACCGGCGGGTGCT
GTCGGCAAAGTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(201-405)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(412-504)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5B8RW48

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.779

99.216

0.514
  comM Haemophilus influenzae Rd KW20

51.181

99.608

0.51
  comM Vibrio campbellii strain DS40M4

50.791

99.216

0.504
  comM Glaesserella parasuis strain SC1401

49.706

100

0.498
  comM Legionella pneumophila str. Paris

48.343

100

0.486
  comM Legionella pneumophila strain ERS1305867

48.343

100

0.486
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.66

100

0.451

Multiple sequence alignment