Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EBC_RS03200 Genome accession   NC_014306
Coordinates   397415..397963 (+) Length   182 a.a.
NCBI ID   WP_013200372.1    Uniprot ID   -
Organism   Erwinia billingiae Eb661     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 392415..402963
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EBC_RS03190 (EbC_03320) - 392849..393904 (-) 1056 WP_013200370.1 NAD(P)-dependent alcohol dehydrogenase -
  EBC_RS03195 (EbC_03330) uvrA 394279..397110 (-) 2832 WP_013200371.1 excinuclease ABC subunit UvrA -
  EBC_RS03200 (EbC_03340) ssb 397415..397963 (+) 549 WP_013200372.1 single-stranded DNA-binding protein SSB1 Machinery gene
  EBC_RS03205 (EbC_03350) fhuE 398260..400500 (+) 2241 WP_013200373.1 ferric-rhodotorulic acid/ferric-coprogen receptor FhuE -
  EBC_RS03210 (EbC_03360) fhuD 400490..401401 (+) 912 WP_013200374.1 Fe(3+)-hydroxamate ABC transporter substrate-binding protein FhuD -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 19301.29 Da        Isoelectric Point: 5.2456

>NTDB_id=37715 EBC_RS03200 WP_013200372.1 397415..397963(+) (ssb) [Erwinia billingiae Eb661]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGETKEKTEWHRVVLFGKLAEVAAEYLRKGSQVYI
EGALQTRKWTDQAGVEKYTTEVVVNVGGTMQMLGGRQGGGAGAPAGGGGQGSNNGWGQPQQPQSGGNQFSGGQQARPQAQ
PQQNSAPANNEPPMDFDDDIPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=37715 EBC_RS03200 WP_013200372.1 397415..397963(+) (ssb) [Erwinia billingiae Eb661]
ATGGCCAGCAGAGGCGTAAACAAAGTGATCCTGGTGGGCAACCTGGGTCAAGATCCGGAAGTCCGCTACATGCCTAATGG
CGGCGCCGTTGCCAACATCACGCTGGCCACGTCCGAAAGCTGGCGTGACAAGCAAACCGGCGAAACCAAAGAAAAAACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCGGAAGTCGCGGCAGAGTACCTGCGTAAAGGTTCTCAGGTGTATATC
GAAGGCGCACTGCAGACCCGCAAATGGACTGACCAGGCTGGCGTTGAGAAGTACACCACCGAAGTGGTCGTCAACGTTGG
CGGCACCATGCAGATGCTGGGTGGACGTCAGGGCGGCGGTGCAGGCGCACCGGCTGGCGGCGGCGGCCAGGGCAGCAACA
ACGGCTGGGGTCAGCCACAGCAGCCACAGAGTGGCGGCAACCAGTTCAGCGGCGGCCAGCAGGCACGTCCGCAGGCTCAG
CCACAGCAGAACAGCGCGCCGGCTAACAACGAGCCACCAATGGACTTCGACGACGATATCCCATTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

69.565

100

0.703
  ssb Glaesserella parasuis strain SC1401

55.789

100

0.582
  ssb Neisseria meningitidis MC58

44.751

99.451

0.445
  ssb Neisseria gonorrhoeae MS11

44.199

99.451

0.44
  ssbA Bacillus subtilis subsp. subtilis str. 168

37.778

98.901

0.374

Multiple sequence alignment