Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   EBC_RS02335 Genome accession   NC_014306
Coordinates   204340..205860 (-) Length   506 a.a.
NCBI ID   WP_013200221.1    Uniprot ID   -
Organism   Erwinia billingiae Eb661     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 199340..210860
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EBC_RS02325 (EbC_01810) hdfR 203030..203854 (-) 825 WP_041692181.1 HTH-type transcriptional regulator HdfR -
  EBC_RS02330 (EbC_01820) - 203976..204314 (+) 339 WP_013200220.1 DUF413 domain-containing protein -
  EBC_RS02335 (EbC_01830) comM 204340..205860 (-) 1521 WP_013200221.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  EBC_RS24950 ilvL 206206..206304 (+) 99 WP_071822090.1 ilv operon leader peptide -
  EBC_RS02340 (EbC_01840) ilvG 206445..208091 (+) 1647 WP_013200222.1 acetolactate synthase 2 catalytic subunit -
  EBC_RS02345 ilvM 208088..208345 (+) 258 WP_041691853.1 acetolactate synthase 2 small subunit -
  EBC_RS02350 (EbC_01850) - 208365..209291 (+) 927 WP_013200223.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55171.43 Da        Isoelectric Point: 8.4948

>NTDB_id=37713 EBC_RS02335 WP_013200221.1 204340..205860(-) (comM) [Erwinia billingiae Eb661]
MSLSLAYTRAAIGIEAPLVLVEVHLSNGLPALSLVGLPETTVKEARDRVRSAIINCGFTFPAKRITVNLAPADLPKEGGR
YDLPIAIAILAASEQIPAEKLGQFEFLGELALTGALRGVQGAIPAALAATQAQRQLILSSDNLEEVGMIHEAKSLLSSHL
LNVCHFLAGHTTLEEARCELPEVGWQGGDLSDIVGQQQAKRALEICAAGGHNLLLIGPPGTGKTMLATRLTGLMPSLSDE
EALESAAIASLVSTGVLHQQWRQRPFRAPHHTSSRYALVGGGSMPKPGEISLAHNGILFLDELPEFDRKTLDALREPLES
GEICISRARAKVTYPARFQLIAAMNPSPTGHYQGTHNRSTPQQTLRYLNKLSGPFLDRFDLSLEVPLLPPGTLSRQNANS
ESSTTIRLRVIAARQRQLNRAGKVNALIQPKEIKRDCRITQQDAQWLEEVLNQLGLSVRAWQRILKVARTIADLGKKESI
QREHLHEALSYRGIDRLLSHLQKSLE

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=37713 EBC_RS02335 WP_013200221.1 204340..205860(-) (comM) [Erwinia billingiae Eb661]
ATGTCGCTATCTCTCGCCTATACCCGAGCCGCTATTGGTATCGAGGCGCCATTGGTGTTGGTTGAAGTTCATCTCAGTAA
TGGCCTGCCCGCGCTTTCACTGGTGGGTCTGCCTGAAACGACGGTAAAAGAAGCCCGCGATCGGGTACGCAGTGCCATCA
TCAACTGTGGCTTTACCTTTCCCGCTAAACGCATCACCGTCAATCTTGCGCCAGCCGATCTTCCCAAAGAAGGAGGAAGA
TACGATCTTCCTATCGCAATAGCGATTCTGGCGGCCTCAGAACAGATTCCTGCGGAGAAATTGGGGCAATTTGAATTCCT
GGGAGAGTTAGCTTTAACAGGTGCTCTCCGTGGCGTACAGGGCGCTATTCCCGCAGCGCTGGCAGCCACTCAGGCACAGC
GCCAGCTGATCTTGTCGAGCGATAACCTTGAAGAGGTCGGCATGATCCACGAGGCGAAAAGCTTGCTGAGCAGTCATCTA
TTAAACGTTTGCCATTTTCTGGCCGGCCACACAACGCTTGAAGAGGCACGATGTGAGTTACCTGAGGTAGGTTGGCAAGG
AGGAGACCTCAGTGACATCGTGGGTCAGCAACAGGCTAAGCGGGCACTGGAAATTTGTGCCGCCGGTGGGCATAACCTGT
TACTGATTGGGCCACCCGGCACAGGGAAGACCATGCTTGCCACCAGGCTAACCGGGTTGATGCCATCATTAAGCGATGAG
GAGGCCCTGGAGAGCGCCGCAATCGCCAGCCTGGTCAGCACAGGTGTCCTGCATCAGCAATGGCGACAGCGCCCATTCCG
GGCCCCTCATCACACGTCATCACGCTATGCACTGGTCGGTGGCGGTTCAATGCCAAAACCCGGCGAGATTTCGCTGGCAC
ACAATGGCATTCTGTTCCTGGATGAGCTGCCAGAGTTTGATCGTAAAACGCTGGATGCGCTGAGAGAACCGCTGGAGTCT
GGTGAGATTTGTATTTCACGCGCGCGGGCGAAAGTGACCTACCCGGCGCGCTTTCAGTTAATAGCCGCAATGAACCCCAG
CCCGACAGGTCATTATCAGGGTACCCATAATCGCAGCACGCCGCAGCAGACGCTTCGCTACCTCAACAAACTGTCCGGGC
CGTTCCTCGATCGCTTCGATCTGTCGCTTGAAGTCCCTCTGCTTCCACCTGGCACACTGAGCAGGCAAAACGCCAACAGT
GAAAGCAGCACCACTATTCGGCTGAGGGTGATTGCGGCCCGACAACGCCAGCTTAATCGTGCCGGAAAGGTTAATGCCCT
GATTCAGCCCAAAGAAATTAAGCGCGATTGCCGGATAACGCAGCAGGATGCGCAGTGGCTCGAAGAGGTGTTGAATCAGT
TAGGTCTGTCAGTTCGCGCCTGGCAGCGTATTCTGAAGGTTGCCCGCACGATTGCAGATTTAGGAAAGAAGGAGAGTATT
CAGCGAGAGCACCTGCACGAGGCGCTAAGTTATCGGGGGATCGACAGGTTACTTAGCCATCTACAGAAAAGTCTGGAATG
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-388)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

62.055

100

0.621
  comM Glaesserella parasuis strain SC1401

61.736

100

0.619
  comM Vibrio cholerae strain A1552

60.239

99.407

0.599
  comM Vibrio campbellii strain DS40M4

59.363

99.209

0.589
  comM Legionella pneumophila str. Paris

49.703

99.802

0.496
  comM Legionella pneumophila strain ERS1305867

49.703

99.802

0.496
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.334

99.407

0.441

Multiple sequence alignment