Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AOLE_RS18365 Genome accession   NC_014259
Coordinates   3901860..3903344 (+) Length   494 a.a.
NCBI ID   WP_013199143.1    Uniprot ID   A0AAN0PC82
Organism   Acinetobacter oleivorans DR1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3896860..3908344
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOLE_RS18340 (AOLE_18290) ribD 3897781..3898866 (-) 1086 WP_013199140.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  AOLE_RS18345 (AOLE_18295) nrdR 3898882..3899340 (-) 459 WP_004795187.1 transcriptional regulator NrdR -
  AOLE_RS18350 (AOLE_18305) - 3899505..3900893 (-) 1389 WP_013199142.1 ammonium transporter -
  AOLE_RS18355 (AOLE_18310) glnK 3900950..3901288 (-) 339 WP_000780326.1 P-II family nitrogen regulator -
  AOLE_RS18360 (AOLE_18315) - 3901567..3901794 (+) 228 WP_004795193.1 accessory factor UbiK family protein -
  AOLE_RS18365 (AOLE_18320) comM 3901860..3903344 (+) 1485 WP_013199143.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AOLE_RS18370 (AOLE_18325) - 3903449..3903994 (+) 546 WP_013199144.1 NADPH-dependent FMN reductase -
  AOLE_RS20915 - 3903998..3904099 (+) 102 Protein_3641 ATP-binding protein -
  AOLE_RS18375 (AOLE_18330) - 3904125..3905558 (-) 1434 WP_013199145.1 PLP-dependent aminotransferase family protein -
  AOLE_RS18380 (AOLE_18335) - 3905670..3906446 (+) 777 WP_013199146.1 aldolase -
  AOLE_RS18385 (AOLE_18340) - 3906462..3907340 (+) 879 WP_013199147.1 dihydrodipicolinate synthase family protein -
  AOLE_RS18390 (AOLE_18345) - 3907383..3908195 (-) 813 WP_013199148.1 TorF family putative porin -

Sequence

Protein


Download         Length: 494 a.a.        Molecular weight: 54349.31 Da        Isoelectric Point: 7.5369

>NTDB_id=37704 AOLE_RS18365 WP_013199143.1 3901860..3903344(+) (comM) [Acinetobacter oleivorans DR1]
MSFSKIYTRGLLGLHAPLIEVEVHVSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLPIAIGILIASGQLPENCAEDFELIGELALDGHVRPVSGTLTLAMACQQAKHKMLLPLDNSQDINHLPDLECYPVSHL
KEVCEHFLGTKSLSSIEPSTTSNQMPYKFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPLSN
QETLEVASIYSISNTSHTFGQRPFRAPHHTASAIALVGGGSHPKPGEITLSHLGVLFLDELPEFDRKVLEVLRQPLESKE
IIISRAARQITYPANFQLIAAMNPCPCGYAFNQDSRCQCSPESIKRYQNRISGPLLDRIDLHIDVPPLKAQELQDPTPVE
NSSSVRQRVIYAYEQQIQRQNCLNQALSPKQLEQHAVLDSTSQRMIEMAQQRLNLSARAYHRVLRVARTIADLAQSEMIQ
SPHLTEALSYRGNS

Nucleotide


Download         Length: 1485 bp        

>NTDB_id=37704 AOLE_RS18365 WP_013199143.1 3901860..3903344(+) (comM) [Acinetobacter oleivorans DR1]
ATGTCTTTTTCTAAAATTTATACACGGGGACTTTTAGGTTTACATGCACCTCTGATTGAAGTTGAGGTACATGTAAGTCA
AGGCTTACCTTCTCTTACCATTGTCGGACTAGCAGAAGCGGCGGTCAGAGAAAGTAAAGACCGAGTTCGCTCAGCCATTA
TTAATAGTGGATTTCAATTTCCAACTAAACGGCTGACCATTAATCTTGCACCAGCAGATTTGCCCAAAGATGGGTCACGT
CTGGATTTACCAATTGCTATAGGCATTTTAATTGCTTCTGGTCAGCTTCCCGAAAACTGTGCCGAAGATTTTGAATTAAT
TGGTGAATTAGCGCTGGATGGCCATGTAAGACCAGTGTCAGGTACTTTAACTTTGGCCATGGCCTGTCAACAGGCCAAGC
ATAAAATGCTTTTACCTCTCGATAATAGTCAAGATATTAACCATTTACCGGACCTTGAGTGTTATCCGGTGAGCCATTTA
AAAGAAGTCTGTGAACACTTTCTGGGCACGAAATCTCTATCTTCGATTGAACCTTCAACGACATCAAATCAAATGCCTTA
TAAATTTGATTTGGCAGATGTAAAAGGTCAGCTACGCCCACGTCGCGCCCTAGAAATAGCCGCAGCAGGGGGACATTCTC
TGCTCTTTAAAGGACCACCGGGCACCGGTAAGACTTTACTCGCTTCACGCCTTCCTTCAATTTTGCCACCTCTTTCTAAT
CAAGAAACACTTGAAGTTGCGAGTATTTATTCGATTTCAAATACATCGCATACGTTTGGACAGCGTCCTTTTCGTGCGCC
CCACCATACCGCATCAGCAATTGCACTCGTTGGGGGCGGATCTCACCCTAAACCGGGTGAAATTACCTTATCTCACTTAG
GTGTTCTATTTTTAGATGAACTTCCAGAGTTTGACAGGAAGGTGCTAGAAGTTTTACGTCAGCCGCTTGAGTCAAAAGAA
ATCATTATTTCACGAGCAGCTCGGCAAATTACTTATCCGGCTAACTTTCAACTGATTGCAGCGATGAACCCCTGCCCATG
TGGTTATGCATTTAATCAAGACAGTCGTTGCCAATGTTCACCTGAGAGTATTAAGCGCTATCAAAACCGTATATCAGGCC
CGTTACTTGACCGTATCGATTTACATATTGATGTACCGCCTTTAAAAGCTCAGGAACTGCAAGATCCAACGCCTGTTGAA
AATTCGAGCAGTGTTCGACAACGTGTGATTTATGCCTATGAACAACAGATTCAAAGACAAAATTGTTTAAATCAGGCGCT
TTCACCGAAGCAGCTAGAACAACATGCTGTACTTGATAGTACTTCTCAACGAATGATTGAAATGGCTCAACAACGTTTAA
ATTTATCGGCTCGTGCTTATCATCGTGTTTTACGAGTAGCGCGGACCATTGCTGATTTAGCTCAAAGTGAGATGATTCAA
AGTCCTCACCTTACAGAAGCATTATCCTATCGAGGAAATAGTTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

50.403

100

0.506
  comM Glaesserella parasuis strain SC1401

49.8

100

0.504
  comM Haemophilus influenzae Rd KW20

48.898

100

0.494
  comM Legionella pneumophila str. Paris

48.795

100

0.492
  comM Legionella pneumophila strain ERS1305867

48.795

100

0.492
  comM Vibrio campbellii strain DS40M4

47.475

100

0.476
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.924

100

0.468

Multiple sequence alignment