Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   FQU71_RS05955 Genome accession   NZ_CP042254
Coordinates   1168987..1171092 (+) Length   701 a.a.
NCBI ID   WP_150865980.1    Uniprot ID   -
Organism   Legionella longbeachae strain B3526CHC     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1163987..1176092
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FQU71_RS05930 (FQU71_05930) - 1164580..1166010 (-) 1431 WP_003632475.1 hypothetical protein -
  FQU71_RS05935 (FQU71_05935) pilM 1166247..1167311 (+) 1065 WP_003632474.1 type IV pilus assembly protein PilM Machinery gene
  FQU71_RS05940 (FQU71_05940) pilN 1167316..1167879 (+) 564 WP_003632473.1 PilN domain-containing protein Machinery gene
  FQU71_RS05945 (FQU71_05945) pilO 1167876..1168475 (+) 600 WP_012978910.1 type 4a pilus biogenesis protein PilO Machinery gene
  FQU71_RS05950 (FQU71_05950) pilP 1168472..1168978 (+) 507 WP_003632471.1 pilus assembly protein PilP Machinery gene
  FQU71_RS05955 (FQU71_05955) pilQ 1168987..1171092 (+) 2106 WP_150865980.1 type IV pilus secretin PilQ Machinery gene
  FQU71_RS05960 (FQU71_05960) aroK 1171428..1171955 (+) 528 WP_003632469.1 shikimate kinase AroK -
  FQU71_RS05965 (FQU71_05965) aroB 1171942..1173045 (+) 1104 WP_150865981.1 3-dehydroquinate synthase -
  FQU71_RS05970 (FQU71_05970) - 1173048..1174481 (+) 1434 WP_150865982.1 SPOR domain-containing protein -
  FQU71_RS05975 (FQU71_05975) - 1175370..1175627 (+) 258 WP_225316842.1 hypothetical protein -

Sequence

Protein


Download         Length: 701 a.a.        Molecular weight: 77999.05 Da        Isoelectric Point: 9.5666

>NTDB_id=376330 FQU71_RS05955 WP_150865980.1 1168987..1171092(+) (pilQ) [Legionella longbeachae strain B3526CHC]
MQRIVVFLILIGMSLGLAFAQNNTLISVKVIPLPEEKLRIDFIFAHPVKKQPGNFVIENPARIVIDFVDTNLQLPTEQKT
KEIKFGSLASYTLVTVGARVRAVLDLKYAVPYLGSVSGRVYTIILNGKSNELFQAPKEMLITNRPVKTSYEITHFDFRGV
ERQAGRAVVDVSSASIPIDVEEHDKEIIVKFLNTKVPQNLRKRFDVSDFRSPVNLITLQQDGKNARMTLMGDRYFGHNIY
QINKQFMVDVFPLTQEEIEQEKLKKQVFSGRRISLNFQNISIRSVLQLLADFTGINIVASDRVQGNITLRLNNIPWDQAL
DIILKTQGLAQRQNGNVMVIDTQKSFNDMEEQQLKSQHKIQRLEPVRSELIQINYAKATDLAILIKDRQNSLLSDKGKVS
VDTRTNTIWIQDSGSRVDEVRKLIKELDVPVKQVLIEARIVEVTKDFAQDLGIRWGVSKPQHLSGTLAGANQLAQGVAPA
DVTPFTDRLNLDLVAAPLTKANPATVGIALAQLGDNILLDLELSALESEGLAELISSPRLITANQQPALIDSGQEIPYQQ
STSSGATAVAFKKAVLSLKVIPQITPDNKILMDLKINQDLALPNQTYNGVPAIATKEIQTNVLVSNGQTIVLGGIYQQDK
SKTITRVPFFGQLPVVGNLFKNTQIGVHNDELLIFITPKIITNSLSITTIEGRNPVRFDEK

Nucleotide


Download         Length: 2106 bp        

>NTDB_id=376330 FQU71_RS05955 WP_150865980.1 1168987..1171092(+) (pilQ) [Legionella longbeachae strain B3526CHC]
GTGCAAAGAATAGTTGTTTTTTTAATCTTGATAGGAATGAGCTTGGGCTTGGCTTTTGCTCAGAATAACACTTTGATATC
CGTAAAGGTGATTCCTTTGCCGGAGGAGAAGTTACGTATCGACTTTATATTTGCTCATCCGGTTAAAAAACAACCAGGTA
ATTTTGTAATCGAAAATCCGGCACGCATTGTTATAGATTTTGTTGACACTAATTTACAGTTACCCACTGAGCAGAAAACG
AAGGAAATTAAATTTGGTTCTCTGGCTAGCTATACTCTTGTAACTGTTGGTGCCCGTGTTCGAGCTGTTTTGGATTTAAA
ATACGCTGTGCCATATTTAGGCTCAGTTTCAGGCAGGGTTTATACGATTATTTTAAATGGTAAGAGCAATGAATTATTTC
AAGCCCCTAAAGAAATGTTGATTACCAATCGTCCAGTAAAAACAAGTTATGAAATTACCCATTTTGATTTTCGAGGAGTT
GAACGCCAGGCAGGACGTGCGGTTGTTGATGTTTCGAGCGCCAGTATTCCAATTGATGTAGAAGAGCATGACAAGGAAAT
TATAGTTAAATTTTTAAATACTAAAGTGCCGCAAAATTTAAGGAAACGTTTTGATGTTTCTGATTTTCGCAGTCCGGTGA
ATTTGATTACCTTGCAACAGGATGGAAAAAATGCGCGTATGACCTTAATGGGCGATAGATATTTTGGTCACAATATCTAT
CAGATTAACAAACAGTTTATGGTTGATGTATTTCCGTTGACTCAGGAAGAAATTGAACAGGAAAAACTTAAGAAACAGGT
ATTTTCTGGAAGACGGATTTCTTTAAATTTCCAAAATATCAGCATACGATCAGTATTACAGTTACTTGCTGATTTCACAG
GGATAAATATTGTTGCAAGTGACAGAGTTCAAGGGAATATTACTTTACGGTTAAATAATATTCCCTGGGATCAAGCATTA
GATATTATTTTAAAAACCCAAGGCCTGGCACAGCGCCAAAATGGAAATGTAATGGTGATCGACACGCAAAAATCGTTTAA
TGACATGGAGGAGCAGCAACTTAAGAGCCAACATAAAATCCAAAGACTGGAACCCGTACGTTCCGAACTCATACAAATTA
ATTATGCCAAAGCGACCGATCTCGCAATTTTAATTAAAGACAGACAAAACTCACTTTTATCCGACAAAGGTAAAGTCAGT
GTCGATACACGTACGAATACTATATGGATCCAAGATAGTGGTAGTAGAGTAGATGAGGTCAGAAAGTTAATAAAGGAATT
GGATGTTCCTGTAAAACAGGTACTGATTGAAGCCCGTATTGTTGAGGTGACTAAAGATTTTGCCCAGGATTTAGGTATAC
GTTGGGGGGTTTCCAAGCCGCAACATTTAAGCGGTACTCTAGCTGGGGCAAATCAATTGGCGCAAGGGGTTGCTCCTGCA
GATGTTACACCTTTTACGGACAGATTGAATTTGGATTTGGTAGCAGCCCCTTTGACAAAGGCAAATCCAGCTACAGTAGG
AATTGCTTTAGCGCAGCTTGGCGACAATATATTGCTTGATTTGGAGCTTTCAGCTTTAGAAAGTGAAGGACTCGCAGAGC
TAATTTCCAGCCCCAGGTTAATTACAGCAAACCAGCAGCCTGCATTAATTGACTCAGGCCAAGAAATTCCTTATCAACAA
TCAACTTCTAGTGGTGCAACTGCAGTAGCATTTAAAAAGGCAGTCTTGAGTTTAAAAGTAATACCACAAATTACTCCTGA
TAACAAAATCCTTATGGATTTAAAGATTAATCAGGATCTTGCATTACCTAATCAGACTTATAATGGGGTTCCAGCAATTG
CAACTAAAGAAATTCAGACCAATGTTTTAGTGAGCAATGGACAAACTATTGTATTGGGAGGGATTTATCAACAAGATAAA
AGCAAGACAATTACTCGCGTGCCTTTTTTTGGCCAATTGCCGGTAGTAGGGAATTTATTTAAAAATACACAAATTGGTGT
TCACAATGATGAGCTACTTATTTTTATAACTCCTAAAATAATAACGAATTCATTATCTATCACTACTATTGAGGGGCGAA
ATCCAGTACGTTTTGATGAAAAATAG

Domains

Predicted by InterproScan.

AMIN domain (AMIN)

(41-112)

Bacterial type II and III secretion system protein (Secretin)

(525-681)

Bacterial type II/III secretion system short domain (Secretin_N)

(369-433)

Secretin and TonB N terminus short domain (STN)

(296-340)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Legionella pneumophila strain Lp02

70.162

96.576

0.678
  pilQ Legionella pneumophila strain ERS1305867

70.222

96.291

0.676
  pilQ Pseudomonas aeruginosa PAK

36.298

99.429

0.361

Multiple sequence alignment