Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   FPZ22_RS06650 Genome accession   NZ_CP042218
Coordinates   1456176..1457702 (+) Length   508 a.a.
NCBI ID   WP_144891521.1    Uniprot ID   A0A518N3V3
Organism   Luteimonas granuli strain Gr-4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1451176..1462702
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FPZ22_RS14020 - 1451571..1451984 (+) 414 WP_246121013.1 DMT family transporter -
  FPZ22_RS06625 (FPZ22_06625) - 1452019..1452423 (-) 405 WP_144891513.1 cupin domain-containing protein -
  FPZ22_RS06630 (FPZ22_06630) speA 1452467..1454356 (-) 1890 WP_144891515.1 arginine decarboxylase -
  FPZ22_RS06635 (FPZ22_06635) speE 1454518..1455366 (+) 849 WP_144891517.1 polyamine aminopropyltransferase -
  FPZ22_RS06640 (FPZ22_06640) - 1455389..1455727 (-) 339 WP_132998728.1 P-II family nitrogen regulator -
  FPZ22_RS06645 (FPZ22_06645) - 1455869..1456165 (+) 297 WP_144891519.1 accessory factor UbiK family protein -
  FPZ22_RS06650 (FPZ22_06650) comM 1456176..1457702 (+) 1527 WP_144891521.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  FPZ22_RS06655 (FPZ22_06655) - 1457780..1458178 (+) 399 WP_144891523.1 MbcA/ParS/Xre antitoxin family protein -
  FPZ22_RS06660 (FPZ22_06660) - 1458178..1458867 (+) 690 WP_144891525.1 RES family NAD+ phosphorylase -
  FPZ22_RS06665 (FPZ22_06665) aceA 1458923..1460215 (-) 1293 WP_144891527.1 isocitrate lyase -
  FPZ22_RS06670 (FPZ22_06670) aceB 1460322..1461938 (-) 1617 WP_144891529.1 malate synthase A -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 53108.83 Da        Isoelectric Point: 8.7877

>NTDB_id=376058 FPZ22_RS06650 WP_144891521.1 1456176..1457702(+) (comM) [Luteimonas granuli strain Gr-4]
MAGLAIVHGRARAGVRAPEVTVEVYMSGGLPRMSIVGLPQAAVRESKDRVRAAIRCAQFEFPPRVTTVNLAPADLPKGGG
RFDLPIALGILAASGQLERTALAGHEFLGELGLTGELRAVDGVLPAALACGAARRVLVVPADNGPEAALARGVDVRVART
LSEVCAHLAGRRPLPKAQAGAAVGGPGAGAPDLADVRGQLRARRALEIAAAGSHHLLLAGSPGCGKTLLASRLPGILPEA
SEAEALETAAIASVSGRGIDPARWRQRPFRAPHHTASAIALAGGGSEPRPGEISLAHNGVLFLDELPEWNRHVLEVLREP
LESGTVTVSRAARQSEFPARFQLVAAMNPCPCGWAGDASGRCQCSIDLVQRYRSRVSGPLLDRIDLHVDVSRVPPTELRP
DAPAGEPSATVRVRVEAARAVQLERAGVLNAHLDQAGTVAHCRLQADDQALLEHAIENLQLSARAMHRILRVARTIADLS
GGGPIARPHLAEALGYRGFDPRAQAAAS

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=376058 FPZ22_RS06650 WP_144891521.1 1456176..1457702(+) (comM) [Luteimonas granuli strain Gr-4]
GTGGCGGGACTTGCGATCGTGCACGGCCGTGCACGCGCTGGCGTGCGCGCGCCGGAAGTCACGGTCGAGGTCTACATGAG
CGGAGGGCTGCCGCGGATGTCGATAGTCGGCCTTCCGCAGGCCGCGGTGCGCGAATCGAAGGACCGCGTGCGTGCCGCCA
TCCGCTGCGCGCAGTTCGAGTTCCCGCCGCGGGTCACCACGGTCAACCTGGCGCCGGCCGACCTGCCGAAAGGCGGCGGG
CGCTTCGACCTGCCGATCGCGCTGGGCATCCTCGCGGCCAGCGGACAGCTGGAACGCACGGCGCTGGCCGGGCACGAATT
CCTGGGCGAGCTGGGGCTGACTGGTGAACTCCGCGCGGTCGACGGCGTGCTGCCGGCAGCCCTGGCCTGCGGTGCGGCCC
GCCGGGTGCTGGTGGTGCCCGCCGACAACGGGCCCGAGGCGGCGCTCGCCCGCGGCGTGGACGTGCGCGTGGCCCGCACC
CTGTCCGAGGTCTGCGCCCACCTGGCCGGGCGCAGGCCGCTGCCGAAGGCGCAGGCCGGCGCAGCGGTCGGCGGCCCCGG
CGCCGGCGCGCCGGACCTGGCCGATGTGCGCGGCCAGCTGCGCGCCCGGCGGGCGCTCGAAATCGCCGCCGCCGGCAGCC
ACCACCTCCTGCTGGCCGGCAGCCCGGGCTGCGGCAAGACCCTGCTCGCCTCGCGCCTGCCCGGCATCCTGCCCGAAGCC
AGCGAGGCCGAGGCGCTGGAGACCGCGGCCATCGCATCGGTCAGCGGTCGCGGGATCGACCCGGCGCGGTGGCGGCAGCG
GCCGTTCCGCGCTCCGCACCACACCGCCAGCGCCATCGCCCTGGCGGGCGGCGGCAGCGAACCGCGCCCCGGCGAGATCT
CGCTCGCGCACAACGGCGTCCTGTTCCTGGACGAACTGCCCGAATGGAACCGACATGTGCTGGAGGTGCTGCGCGAGCCG
CTGGAATCAGGGACGGTCACCGTCTCCCGTGCCGCGCGGCAGAGCGAGTTCCCCGCGCGCTTCCAGCTCGTGGCGGCCAT
GAACCCCTGCCCCTGCGGCTGGGCCGGGGATGCCTCCGGCCGATGCCAGTGCAGCATCGACCTGGTGCAACGCTATCGCT
CCCGGGTGTCCGGACCGCTGCTCGATCGCATCGATCTGCACGTCGACGTGTCGCGCGTTCCGCCCACCGAGCTTCGGCCC
GACGCGCCCGCCGGCGAACCCAGCGCGACGGTGCGCGTCCGGGTCGAGGCTGCCCGCGCAGTGCAGCTCGAACGCGCCGG
CGTGCTCAACGCCCATCTCGACCAGGCCGGCACCGTCGCACACTGCCGCCTGCAGGCGGACGACCAGGCGCTCCTGGAGC
ACGCGATCGAGAACCTGCAGCTGTCGGCGCGCGCCATGCACCGGATCCTGCGCGTGGCGCGCACGATCGCCGATCTCTCC
GGCGGAGGACCGATCGCGCGTCCGCACCTGGCCGAGGCGTTGGGCTATCGCGGCTTCGATCCGCGGGCGCAGGCGGCCGC
TTCCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)

Subunit ChlI of Mg-chelatase (ChlI)

(22-143)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(192-396)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A518N3V3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.221

98.031

0.541
  comM Vibrio campbellii strain DS40M4

54.274

99.016

0.537
  comM Haemophilus influenzae Rd KW20

52.918

97.835

0.518
  comM Glaesserella parasuis strain SC1401

51.195

98.819

0.506
  comM Legionella pneumophila str. Paris

49.2

98.425

0.484
  comM Legionella pneumophila strain ERS1305867

49.2

98.425

0.484
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.664

99.606

0.445

Multiple sequence alignment