Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   AAZO_RS23590 Genome accession   NC_014248
Coordinates   5073874..5074239 (-) Length   121 a.a.
NCBI ID   WP_013193093.1    Uniprot ID   A0A926WHW0
Organism   'Nostoc azollae' 0708     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5068874..5079239
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAZO_RS23580 (Aazo_4950) - 5070389..5073316 (-) 2928 WP_013193091.1 methyl-accepting chemotaxis protein -
  AAZO_RS23585 (Aazo_4951) - 5073333..5073860 (-) 528 WP_013193092.1 chemotaxis protein CheW -
  AAZO_RS23590 (Aazo_4952) pilH 5073874..5074239 (-) 366 WP_013193093.1 response regulator transcription factor Machinery gene
  AAZO_RS23595 (Aazo_4953) - 5074437..5075642 (-) 1206 Protein_5206 response regulator -
  AAZO_RS23600 (Aazo_4954) hmpF 5076220..5077980 (+) 1761 WP_013193094.1 pilus motility taxis protein HmpF -
  AAZO_RS23605 (Aazo_4955) tilS 5078013..5078987 (-) 975 WP_013193095.1 tRNA lysidine(34) synthetase TilS -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13310.42 Da        Isoelectric Point: 4.8604

>NTDB_id=37568 AAZO_RS23590 WP_013193093.1 5073874..5074239(-) (pilH) ['Nostoc azollae' 0708]
MSTVLIVEDSIAQREMITDLLKASGLTVTHAGDGVEALEAIQSTPPDLVVLDIVMPRMNGYELCRRLKSDPKTQNVPVVM
CSSKGEEFDRYWGMKQGADAYIAKPFQPTELVGTVKQLLRG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=37568 AAZO_RS23590 WP_013193093.1 5073874..5074239(-) (pilH) ['Nostoc azollae' 0708]
ATGAGTACAGTTCTGATTGTTGAAGACAGTATCGCCCAAAGGGAGATGATTACAGACCTCCTTAAAGCTAGTGGTCTAAC
TGTTACCCATGCTGGGGATGGAGTAGAAGCTTTAGAAGCAATTCAAAGCACACCTCCCGATTTAGTAGTTTTAGATATTG
TCATGCCCCGGATGAACGGCTACGAACTTTGTCGGCGTTTAAAGTCCGATCCCAAGACCCAAAATGTCCCTGTCGTCATG
TGTTCATCCAAAGGTGAAGAATTTGATCGCTATTGGGGTATGAAACAGGGAGCCGACGCTTACATAGCCAAACCGTTTCA
ACCAACTGAATTGGTAGGAACAGTCAAACAACTGCTGCGAGGATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

76.86

100

0.769
  pilL-C Synechocystis sp. PCC 6803

39.167

99.174

0.388
  pilG Acinetobacter baumannii strain A118

40.351

94.215

0.38
  micA Streptococcus pneumoniae Cp1015

38.333

99.174

0.38
  vicR Streptococcus mutans UA159

37.5

99.174

0.372

Multiple sequence alignment