Detailed information    

insolico Bioinformatically predicted

Overview


Name   comA/nlmT   Type   Regulator
Locus tag   G8B35_RS07460 Genome accession   NZ_CP049697
Coordinates   1477642..1479795 (+) Length   717 a.a.
NCBI ID   WP_011528347.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain ABC3     
Function   transport of ComC (predicted from homology)   
Competence regulation

Genomic Context


Location: 1472642..1484795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G8B35_RS07420 (G8B35_07450) - 1472819..1473229 (-) 411 WP_002985720.1 hypothetical protein -
  G8B35_RS07425 (G8B35_07455) - 1473423..1473704 (-) 282 WP_011528350.1 hypothetical protein -
  G8B35_RS09585 (G8B35_07460) - 1473754..1473882 (-) 129 WP_002985724.1 hypothetical protein -
  G8B35_RS07430 (G8B35_07465) - 1474243..1474440 (-) 198 WP_011528349.1 class IIb bacteriocin, lactobin A/cerein 7B family -
  G8B35_RS07435 (G8B35_07470) - 1474453..1474680 (-) 228 WP_002992018.1 Blp family class II bacteriocin -
  G8B35_RS07440 (G8B35_07475) - 1474995..1475681 (+) 687 Protein_1420 transposase -
  G8B35_RS07445 (G8B35_07480) - 1475872..1476054 (-) 183 WP_002987564.1 class IIb bacteriocin, lactobin A/cerein 7B family -
  G8B35_RS07450 (G8B35_07485) - 1476069..1476314 (-) 246 WP_021299285.1 Blp family class II bacteriocin -
  G8B35_RS07455 (G8B35_07490) - 1476502..1477188 (-) 687 Protein_1423 transposase -
  G8B35_RS07460 (G8B35_07500) comA/nlmT 1477642..1479795 (+) 2154 WP_011528347.1 peptide cleavage/export ABC transporter Regulator
  G8B35_RS07465 (G8B35_07505) - 1479806..1481170 (+) 1365 Protein_1425 bacteriocin secretion accessory protein -
  G8B35_RS07470 (G8B35_07510) - 1481247..1481372 (+) 126 WP_011017462.1 ComC/BlpC family leader-containing pheromone/bacteriocin -
  G8B35_RS07475 (G8B35_07515) - 1481520..1482854 (-) 1335 WP_011528344.1 sensor histidine kinase -
  G8B35_RS07480 (G8B35_07520) comE/blpR 1482855..1483604 (-) 750 WP_011528343.1 response regulator transcription factor Regulator

Sequence


Protein


Download         Length: 717 a.a.        Molecular weight: 80542.47 Da        Isoelectric Point: 7.1728

>NTDB_id=375199 G8B35_RS07460 WP_011528347.1 1477642..1479795(+) (comA/nlmT) [Streptococcus pyogenes strain ABC3]
MISYRKTFVAQIDARDCGVAALASIAKYYGSDYSLAHLRELAKTNKEGTTALGIVKAAKLMGFETRAIQADMTLFDIEDV
PYPFIVHVNKEGKFQHYYVVYQNKKNYLIIGDPDPTVKVTKMTKERFTSEWTGVAIFLAPEPSYKPHKDKKNGLINFLPL
IFKQRSLIFYIILASLLVTLINIVGSYYLQGILDDYIPNQLKSTLGIISIGLIITYILQQMMSFSRDYLLTVLSQRLSID
VILSYIRHIFELPMSFFATRRTGEIISRFTDANAIIDALASTILSLFLDVSILTIVGTVLLVQNTNLFLLSLVSVPLYIV
IIFIFMHPFEKMNNDVMQSNSMVSSAIIEDINGIETIKSLTSEENRYQKIDSEFVDYLDKSFKLSKYSILQSSLKQGAQL
ILNVIVLWFGAKLVMGGKISVGQLITFNTLLSYFTNPLENIINLQTKLQSAKVANNRLNEVYLVDSEFQEAGTLVNQELL
HGNIQFEELSYKYGFGRDTLSNINLTIKQGDKVSLVGISGSGKTTLAKMIVNFFEPYNGRITINHNDLKMIDKKSLRQHI
NYLPQQAYIFNGSILENLTLGANDCTSHEDILRACEVAEIRQDIEQMPMGYQTELSDGAGLSGGQKQRIALARALLTKAP
VLILDEATSGLDVLTEKRVIDNLLAMTDKTIIFVAHRLSISARTNQVIVLDEGKIIETGSHQELMTKQGFYHHLFSG

Nucleotide


Download         Length: 2154 bp        

>NTDB_id=375199 G8B35_RS07460 WP_011528347.1 1477642..1479795(+) (comA/nlmT) [Streptococcus pyogenes strain ABC3]
ATGATATCCTATCGAAAAACATTTGTTGCTCAGATTGATGCTAGAGACTGTGGTGTGGCTGCTCTTGCTTCCATCGCTAA
ATATTACGGTTCAGACTACTCTTTAGCTCATTTAAGAGAGTTAGCTAAAACAAATAAAGAGGGAACAACAGCGCTTGGCA
TCGTCAAAGCTGCCAAATTAATGGGGTTTGAAACAAGAGCTATTCAAGCAGACATGACCCTCTTTGATATAGAAGATGTC
CCTTATCCTTTTATTGTTCATGTTAATAAAGAAGGTAAATTCCAACACTACTATGTCGTCTATCAAAACAAAAAAAATTA
TCTGATAATCGGCGACCCTGACCCGACAGTAAAAGTCACTAAGATGACAAAGGAGCGATTTACTTCTGAATGGACGGGTG
TCGCTATTTTTCTAGCACCCGAGCCCAGCTACAAGCCTCATAAGGACAAAAAGAACGGTCTAATAAACTTTTTACCTCTT
ATTTTTAAACAGCGATCTCTGATTTTCTATATCATATTAGCTAGCCTACTCGTTACTCTGATTAATATTGTAGGTTCTTA
TTACCTACAAGGTATATTAGATGACTATATTCCAAATCAACTGAAATCAACACTCGGCATTATTTCAATTGGTCTTATCA
TTACCTATATCCTCCAACAGATGATGAGTTTTTCGCGAGATTATCTCCTGACTGTACTGAGTCAGCGATTAAGCATTGAC
GTCATTTTATCTTACATTCGCCATATTTTTGAATTACCCATGTCTTTTTTTGCAACTCGCAGAACAGGAGAAATCATTTC
ACGGTTTACAGATGCTAATGCTATTATTGATGCACTCGCTTCTACTATTTTGTCTCTTTTTCTTGATGTCAGTATTTTAA
CTATCGTAGGGACAGTCCTGTTAGTGCAAAATACCAATCTTTTTCTTCTATCTCTGGTTTCAGTCCCTCTATATATTGTT
ATTATCTTTATATTTATGCACCCATTTGAAAAGATGAATAATGATGTCATGCAGAGTAACTCTATGGTTAGCTCAGCCAT
TATCGAAGATATCAATGGCATTGAAACTATTAAATCACTGACCAGTGAAGAAAATCGTTATCAGAAAATTGATAGTGAAT
TTGTGGACTATCTGGATAAATCTTTCAAGTTAAGTAAGTACTCTATTTTACAAAGCAGTCTCAAACAAGGGGCGCAACTA
ATCCTTAACGTGATAGTCTTATGGTTTGGGGCCAAATTAGTTATGGGAGGAAAAATTTCTGTTGGTCAGTTGATTACGTT
TAATACTCTCTTATCTTATTTTACCAATCCTTTAGAAAATATCATTAATCTTCAAACCAAACTTCAATCAGCCAAGGTAG
CTAATAATCGTCTCAATGAAGTTTACCTAGTCGATTCTGAATTTCAAGAGGCTGGGACATTAGTCAATCAAGAATTATTA
CACGGAAACATTCAATTTGAAGAGTTATCCTATAAATATGGCTTTGGACGCGATACTCTATCAAATATTAATCTCACTAT
TAAGCAAGGGGACAAAGTTAGCCTTGTTGGTATTAGTGGATCTGGTAAAACGACTCTAGCTAAAATGATTGTTAATTTTT
TTGAGCCTTATAACGGCCGAATTACCATTAATCATAATGACTTAAAAATGATTGATAAAAAAAGTCTTCGCCAACATATT
AATTATCTCCCCCAACAAGCCTATATTTTTAATGGTTCTATTTTAGAAAATTTAACCTTAGGTGCTAATGACTGTACTAG
TCATGAAGATATTCTAAGAGCTTGTGAGGTTGCAGAAATTCGACAAGATATTGAACAAATGCCTATGGGCTATCAAACAG
AGCTTTCTGATGGTGCCGGACTCTCAGGAGGCCAAAAGCAACGAATTGCGCTTGCCAGAGCTCTCCTAACCAAGGCGCCT
GTGCTTATTCTAGATGAGGCTACAAGCGGTCTTGACGTACTAACTGAAAAGAGGGTTATTGATAATCTTTTGGCTATGAC
GGATAAAACTATTATTTTCGTAGCTCATCGTCTCAGCATTTCAGCGCGGACCAATCAAGTCATTGTGCTTGATGAGGGCA
AAATTATTGAAACAGGATCTCATCAAGAATTAATGACTAAACAAGGTTTCTATCATCATTTATTTAGTGGTTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/nlmT Streptococcus mutans UA159

72.867

99.721

0.727

  comA Streptococcus mitis NCTC 12261

67.511

99.163

0.669

  comA Streptococcus mitis SK321

67.229

99.163

0.667

  comA Streptococcus pneumoniae Rx1

67.089

99.163

0.665

  comA Streptococcus pneumoniae D39

67.089

99.163

0.665

  comA Streptococcus pneumoniae R6

67.089

99.163

0.665

  comA Streptococcus pneumoniae TIGR4

66.807

99.163

0.662

  comA Streptococcus gordonii str. Challis substr. CH1

66.014

99.721

0.658