Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   FPL17_RS13260 Genome accession   NZ_CP041970
Coordinates   2891275..2892405 (+) Length   376 a.a.
NCBI ID   WP_159885477.1    Uniprot ID   -
Organism   Acinetobacter dispersus strain NCCP 16014     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 2886275..2897405
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FPL17_RS13240 (FPL17_13395) - 2886829..2888925 (-) 2097 WP_159885475.1 TonB-dependent copper receptor -
  FPL17_RS13245 (FPL17_13400) - 2889001..2889438 (-) 438 WP_151716524.1 DUF2946 family protein -
  FPL17_RS13250 (FPL17_13405) def 2889458..2889988 (-) 531 WP_005154485.1 peptide deformylase -
  FPL17_RS13255 (FPL17_13410) tsaP 2890113..2891264 (+) 1152 WP_151716523.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  FPL17_RS13260 (FPL17_13415) dprA 2891275..2892405 (+) 1131 WP_159885477.1 DNA-processing protein DprA Machinery gene
  FPL17_RS13265 (FPL17_13420) - 2892442..2893011 (+) 570 WP_151716521.1 L-threonylcarbamoyladenylate synthase -
  FPL17_RS13270 (FPL17_13425) - 2893405..2894325 (-) 921 WP_159886870.1 DMT family transporter -
  FPL17_RS13275 (FPL17_13430) - 2894429..2895082 (-) 654 WP_373885796.1 TetR/AcrR family transcriptional regulator -
  FPL17_RS13280 (FPL17_13435) - 2895220..2896446 (+) 1227 WP_159885479.1 MFS transporter -

Sequence


Protein


Download         Length: 376 a.a.        Molecular weight: 42060.11 Da        Isoelectric Point: 6.7571

>NTDB_id=375088 FPL17_RS13260 WP_159885477.1 2891275..2892405(+) (dprA) [Acinetobacter dispersus strain NCCP 16014]
MLNQLSPHHYHTVLVWYLVQHSLSSFAKIQQHFGNCEQATLPHRFSEWSQLGLHANHLKRVDELQTPQGQQQFEQLVQLI
CRHSDFILTPDDIGYPTQLLPYADRPPILFGQGQAQALLQPQIAMVGSRKPSPHGRQVAYDFAYYLSEKGFFISSGLAHG
IDQAAHQGGLAHQRTIAVTGTGLDTVYPAQHKQLAQQIIQSGAVVTEFLPTTMPLQQHFPRRNRIVSGLSLGVLVVEAAL
KSGSLITANEAATQGKMVFAIPGHIYSEHHQGCHQLIREGAILVDHPEQIIEDLALPTQWQTQQQITEEAPVAPPTLPNH
LIALYQVLDWVGQDLDQLIQRHPMPIAELTAQLMELELLGLCMQQAGRYLRCRPMH

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=375088 FPL17_RS13260 WP_159885477.1 2891275..2892405(+) (dprA) [Acinetobacter dispersus strain NCCP 16014]
ATGTTGAATCAACTATCGCCTCATCACTATCACACTGTGTTGGTGTGGTACTTGGTTCAACATTCGCTATCGAGTTTTGC
CAAAATTCAGCAACATTTTGGTAATTGTGAGCAAGCAACGCTACCGCATCGTTTCTCTGAATGGTCCCAACTTGGCTTAC
ATGCCAATCATTTAAAACGCGTAGACGAATTACAAACACCTCAAGGTCAACAACAATTCGAACAACTGGTTCAATTGATA
TGTCGACATAGTGACTTTATTTTAACGCCTGATGATATTGGCTACCCGACTCAATTGCTGCCTTATGCAGATCGTCCACC
CATTTTATTTGGACAAGGTCAAGCGCAAGCATTATTACAACCGCAAATTGCTATGGTGGGCAGTCGTAAACCCAGTCCCC
ATGGACGACAAGTCGCTTATGACTTTGCTTATTATTTAAGTGAAAAAGGCTTTTTTATTAGTAGCGGACTCGCACATGGA
ATTGATCAGGCAGCACATCAAGGTGGATTAGCTCATCAGAGAACCATTGCCGTTACTGGCACAGGCTTAGATACGGTTTA
TCCTGCTCAGCATAAACAGCTCGCTCAACAGATTATTCAGTCAGGTGCAGTGGTGACTGAGTTTCTACCGACCACCATGC
CCTTGCAACAGCATTTCCCTCGTCGGAATCGAATTGTCAGTGGCTTAAGTCTAGGTGTCTTAGTAGTAGAAGCAGCGCTC
AAAAGTGGTTCATTGATCACCGCCAATGAAGCGGCAACACAAGGTAAAATGGTGTTCGCGATTCCGGGGCATATTTATAG
TGAGCACCATCAAGGCTGTCATCAACTGATTCGCGAAGGTGCAATTCTGGTTGATCATCCCGAACAAATCATCGAAGATC
TTGCACTACCAACGCAATGGCAAACCCAGCAACAAATAACCGAAGAAGCACCTGTCGCCCCTCCTACTTTACCCAACCAT
CTGATTGCGCTTTATCAAGTTTTAGATTGGGTCGGACAAGACCTAGATCAATTGATTCAACGTCATCCGATGCCAATTGC
AGAACTGACTGCACAATTGATGGAGTTAGAATTACTCGGTTTATGCATGCAACAAGCAGGACGCTATTTACGTTGCCGCC
CAATGCATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii D1279779

77.6

99.734

0.774

  dprA Acinetobacter baumannii strain A118

77.067

99.734

0.769

  dprA Acinetobacter baylyi ADP1

69.737

100

0.705

  dprA Vibrio cholerae strain A1552

43.333

87.766

0.38


Multiple sequence alignment