Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   FPL17_RS13255 Genome accession   NZ_CP041970
Coordinates   2890113..2891264 (+) Length   383 a.a.
NCBI ID   WP_151716523.1    Uniprot ID   -
Organism   Acinetobacter dispersus strain NCCP 16014     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2885113..2896264
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FPL17_RS13235 (FPL17_13390) - 2886022..2886783 (+) 762 WP_005186680.1 hypothetical protein -
  FPL17_RS13240 (FPL17_13395) - 2886829..2888925 (-) 2097 WP_159885475.1 TonB-dependent copper receptor -
  FPL17_RS13245 (FPL17_13400) - 2889001..2889438 (-) 438 WP_151716524.1 DUF2946 family protein -
  FPL17_RS13250 (FPL17_13405) def 2889458..2889988 (-) 531 WP_005154485.1 peptide deformylase -
  FPL17_RS13255 (FPL17_13410) tsaP 2890113..2891264 (+) 1152 WP_151716523.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  FPL17_RS13260 (FPL17_13415) dprA 2891275..2892405 (+) 1131 WP_159885477.1 DNA-processing protein DprA Machinery gene
  FPL17_RS13265 (FPL17_13420) - 2892442..2893011 (+) 570 WP_151716521.1 L-threonylcarbamoyladenylate synthase -
  FPL17_RS13270 (FPL17_13425) - 2893405..2894325 (-) 921 WP_159886870.1 DMT family transporter -
  FPL17_RS13275 (FPL17_13430) - 2894429..2895082 (-) 654 WP_373885796.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 383 a.a.        Molecular weight: 41886.99 Da        Isoelectric Point: 9.2753

>NTDB_id=375087 FPL17_RS13255 WP_151716523.1 2890113..2891264(+) (tsaP) [Acinetobacter dispersus strain NCCP 16014]
MKKVLNGIHSFHALGLKKQLIAAAICAGLGMSVNFAHAASPNVSPPSVKVGAPHVYVVKKGDTLWDISGKFLSKPWRWPE
IWASNKHVKNPHWIYPGDRLLLCSLNGKPLIGKDEGDGCDGIIRRYTGNTSNLRPQVRVEALNNSVPVIPLAHIQQWLER
TSVLPADAIANTPYILGTADNRVMAGKGQSVYVRGKGLENGQRYGVFREGEPYTVLDQNGKKQILGVELTQVASGVAIRN
ENDITTVELTDSYNGEVRRGDRVMAEQDAMLPTLFYPIDANQVKDGGKIIRVMGSIGTAAKNGVVTVDRGTTDGVEIGQV
FSIYQDGEVVRDPKTKEQVKLPGQYLGSVMVFKSFDRISYAYVLESELPIKIGSDIKPPRLDD

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=375087 FPL17_RS13255 WP_151716523.1 2890113..2891264(+) (tsaP) [Acinetobacter dispersus strain NCCP 16014]
ATGAAAAAGGTTTTAAACGGCATACACTCATTTCATGCCTTGGGGTTAAAAAAACAACTGATTGCCGCTGCGATTTGTGC
GGGATTGGGTATGAGCGTGAATTTCGCTCATGCGGCAAGCCCGAATGTCAGCCCACCGTCGGTAAAAGTGGGAGCACCTC
ATGTCTACGTGGTAAAAAAAGGCGATACGCTTTGGGATATTTCAGGCAAGTTTTTAAGTAAGCCTTGGCGCTGGCCAGAA
ATTTGGGCAAGCAATAAACATGTGAAAAATCCGCACTGGATTTATCCTGGAGATCGCTTACTACTTTGTAGTTTGAACGG
TAAACCTTTAATCGGTAAAGATGAAGGTGATGGTTGTGACGGTATCATTCGCCGCTATACAGGCAATACTTCTAATTTAC
GTCCGCAAGTTCGTGTTGAAGCATTGAATAATAGCGTTCCCGTGATTCCCTTGGCCCATATTCAGCAATGGCTAGAACGT
ACTTCAGTTCTACCCGCAGATGCGATTGCCAATACGCCATATATTTTAGGCACAGCAGACAACCGTGTCATGGCGGGTAA
AGGCCAAAGTGTTTATGTACGTGGCAAAGGGCTTGAAAATGGTCAACGCTATGGCGTATTCCGTGAGGGTGAACCATATA
CCGTACTAGATCAGAATGGCAAAAAGCAGATCCTTGGCGTTGAACTGACCCAAGTCGCTTCAGGCGTTGCGATTCGTAAC
GAAAATGACATCACCACAGTTGAGCTGACAGATAGCTATAACGGCGAAGTTCGTCGTGGCGATCGTGTTATGGCTGAACA
AGATGCCATGCTACCAACCTTGTTCTATCCAATTGATGCCAATCAAGTGAAAGATGGCGGAAAAATCATTCGTGTGATGG
GATCTATTGGTACAGCAGCCAAAAATGGCGTCGTCACCGTGGATCGTGGTACAACGGATGGTGTAGAAATAGGCCAAGTG
TTCAGTATCTACCAAGATGGCGAAGTTGTAAGAGATCCAAAGACCAAAGAACAAGTAAAACTCCCTGGACAATATTTGGG
TAGTGTCATGGTCTTTAAGAGTTTCGATCGAATCAGCTATGCCTACGTATTAGAGAGTGAGTTACCTATCAAGATTGGTT
CAGATATCAAACCACCTCGTCTTGATGACTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(56-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

71.875

100

0.721

Multiple sequence alignment