Detailed information    

insolico Bioinformatically predicted

Overview


Name   amiE   Type   Regulator
Locus tag   FPL13_RS01425 Genome accession   NZ_CP041968
Coordinates   294688..295755 (+) Length   355 a.a.
NCBI ID   WP_106388162.1    Uniprot ID   -
Organism   Streptococcus sp. KS 6     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context


Location: 289688..300755
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FPL13_RS01410 (FPL13_01445) amiA3 289905..291884 (+) 1980 WP_106388159.1 peptide ABC transporter substrate-binding protein Regulator
  FPL13_RS01415 (FPL13_01450) - 292258..293753 (+) 1496 Protein_285 ABC transporter permease -
  FPL13_RS01420 (FPL13_01455) amiD 293753..294679 (+) 927 WP_106388161.1 oligopeptide ABC transporter permease OppC Regulator
  FPL13_RS01425 (FPL13_01460) amiE 294688..295755 (+) 1068 WP_106388162.1 ABC transporter ATP-binding protein Regulator
  FPL13_RS01430 (FPL13_01465) amiF 295766..296689 (+) 924 WP_049514159.1 ATP-binding cassette domain-containing protein Regulator
  FPL13_RS01435 (FPL13_01470) - 296832..297668 (+) 837 WP_106388163.1 Cof-type HAD-IIB family hydrolase -
  FPL13_RS01440 (FPL13_01475) - 297728..298693 (-) 966 WP_049514156.1 LacI family DNA-binding transcriptional regulator -
  FPL13_RS01445 (FPL13_01480) - 298674..300131 (-) 1458 WP_049514154.1 sucrose-6-phosphate hydrolase -

Sequence


Protein


Download         Length: 355 a.a.        Molecular weight: 39756.48 Da        Isoelectric Point: 4.6920

>NTDB_id=374989 FPL13_RS01425 WP_106388162.1 294688..295755(+) (amiE) [Streptococcus sp. KS 6]
MTQEKNVILTARDIVVEFDVRDKVLTAIRGVSLDLIEGEVLALVGESGSGKSVLTKTFTGMLEENGRVAQGTIDYRGQDL
TKLKSNKDWEPIRGVKIATIFQDPMTSLDPINTIGSQITEVIIKHQKKTPKEAKEMAVDYMNKVGIPDAEKRFYEYPFQY
SGGMRQRIVIAIALACRPDILICDEPTTALDVTIQAQIIDLLKSLQQEYEFTTIFITHDLGVVASIADKVAVMYAGEIIE
YGTVEEVFYDPRHPYTWSLLSSLPQLADDKGELYSIPGTPPSLYSHLQGDAFALRSDYAMEIDFEEKPPQIYVTDTHWAK
TWLLHENAPKVNKPAVIDDLHEKISSKMGFAHLDA

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=374989 FPL13_RS01425 WP_106388162.1 294688..295755(+) (amiE) [Streptococcus sp. KS 6]
ATGACACAGGAAAAAAATGTAATATTGACTGCTCGCGATATTGTCGTGGAATTTGACGTTCGTGATAAGGTCTTAACAGC
TATTCGTGGTGTTTCGCTTGACCTCATTGAAGGTGAAGTTCTTGCACTTGTAGGAGAATCTGGTTCTGGTAAGTCTGTTT
TAACAAAGACATTTACAGGAATGTTAGAAGAAAATGGTCGAGTTGCTCAAGGAACGATTGATTATCGGGGGCAAGATTTG
ACAAAATTGAAGTCAAATAAAGATTGGGAACCTATACGTGGTGTTAAAATTGCGACAATCTTCCAAGATCCGATGACAAG
TTTGGACCCTATTAACACAATCGGTAGCCAAATTACAGAAGTGATTATCAAGCACCAAAAGAAAACGCCTAAAGAAGCGA
AAGAAATGGCTGTTGACTATATGAATAAGGTCGGCATTCCTGATGCTGAAAAGCGCTTTTATGAATACCCATTTCAATAT
TCAGGAGGAATGCGTCAACGGATTGTTATTGCTATTGCGCTTGCTTGTCGTCCTGACATTCTAATCTGTGACGAGCCTAC
GACAGCACTTGACGTTACAATTCAAGCACAAATCATTGATTTGTTGAAATCTTTGCAACAAGAATATGAATTCACAACTA
TTTTTATCACCCACGACCTTGGAGTGGTAGCAAGTATTGCCGATAAGGTTGCGGTTATGTATGCTGGTGAAATCATTGAA
TACGGAACAGTAGAAGAAGTCTTTTACGATCCACGTCATCCTTACACTTGGAGTTTGTTATCTAGTCTACCTCAATTGGC
AGATGATAAGGGTGAACTGTATTCAATTCCTGGAACGCCGCCATCTCTCTATTCGCATTTACAAGGAGATGCATTTGCCT
TGCGTTCGGATTATGCTATGGAAATTGACTTTGAAGAGAAGCCACCTCAAATCTATGTAACGGATACCCATTGGGCAAAA
ACATGGTTGTTACATGAGAACGCTCCAAAAGTGAATAAGCCAGCTGTTATTGATGATTTACACGAAAAAATTAGCTCAAA
AATGGGCTTTGCCCATTTAGACGCCTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

86.119

99.437

0.856

  amiE Streptococcus thermophilus LMG 18311

84.703

99.437

0.842

  amiE Streptococcus thermophilus LMD-9

84.703

99.437

0.842

  oppD Streptococcus mutans UA159

55.65

99.718

0.555


Multiple sequence alignment