Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   FPL04_RS16260 Genome accession   NZ_CP041965
Coordinates   3719260..3720654 (+) Length   464 a.a.
NCBI ID   WP_166770466.1    Uniprot ID   -
Organism   Xanthomonas arboricola strain SL2098     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3714260..3725654
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FPL04_RS16245 (FPL04_16245) sucD 3715153..3716028 (-) 876 WP_011038208.1 succinate--CoA ligase subunit alpha -
  FPL04_RS16250 (FPL04_16250) sucC 3716053..3717222 (-) 1170 WP_039519379.1 ADP-forming succinate--CoA ligase subunit beta -
  FPL04_RS16255 (FPL04_16255) - 3717454..3719067 (+) 1614 WP_039525813.1 HAMP domain-containing sensor histidine kinase -
  FPL04_RS16260 (FPL04_16260) pilR 3719260..3720654 (+) 1395 WP_166770466.1 sigma-54 dependent transcriptional regulator Regulator
  FPL04_RS22115 - 3720951..3721094 (-) 144 WP_166770464.1 hypothetical protein -
  FPL04_RS16265 (FPL04_16265) pilB 3721119..3722828 (-) 1710 WP_186811040.1 type IV-A pilus assembly ATPase PilB Machinery gene
  FPL04_RS16270 (FPL04_16270) - 3722912..3723367 (-) 456 WP_154832506.1 pilin -
  FPL04_RS16275 (FPL04_16275) - 3723476..3723913 (-) 438 WP_104621768.1 pilin -
  FPL04_RS16280 (FPL04_16280) pilC 3724268..3725524 (+) 1257 WP_104621769.1 type II secretion system F family protein Machinery gene

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 50148.54 Da        Isoelectric Point: 6.5112

>NTDB_id=374949 FPL04_RS16260 WP_166770466.1 3719260..3720654(+) (pilR) [Xanthomonas arboricola strain SL2098]
MNEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPDGNGIELVTEIAKHYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPAPPPEQASRLLGDSSAMEGLRATIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASSESLVDVRILSATHKNLGDLVSDGRFRHDLYYRINVIELRVPPLRERGGDLP
QLAAAIIARLAHSHGRPIPLLTQSALDALDQYGFPGNVRELENILERALALAEDDQISATDLRLPAHGGHRLAATPGSAA
VEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=374949 FPL04_RS16260 WP_166770466.1 3719260..3720654(+) (pilR) [Xanthomonas arboricola strain SL2098]
ATGAACGAACCGAAAAGTGCCCTGGTTGTCGATGACGAGCGTGACATTCGCGAACTGCTTGTTCTCACCCTGGGCCGGAT
GGGCCTGCGCATCAGCACCGCCGCCAACCTGGCCGAAGCACGCGAGCTGCTGGCCAACAATCCCTACGACCTGTGCCTGA
CCGACATGCGGTTGCCCGACGGCAACGGCATTGAGCTGGTCACCGAAATCGCCAAGCACTATCCGCAGACCCCGGTGGCG
ATGATCACCGCGTTCGGCAGCATGGACCTGGCGGTGGAAGCCTTGAAGGCCGGTGCCTTCGACTTCGTCAGCAAGCCGGT
GGATATCAGCGTGCTGCGCGGCCTGGTCAAGCACGCGCTGGAATTGAACAACCGCGACCGCCCCGCCCCACCCGCGCCGC
CGCCGGAACAGGCCAGCCGCCTGCTGGGCGATTCCAGTGCGATGGAAGGCCTGCGCGCCACCATCGGCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCGTCGGCGAATCGGGCGTGGGCAAGGAGCTGGTCGCCCGCACCATCCATGAACAAGGCGC
ACGCGCGGCCGGCCCGTTCGTGCCGGTCAACTGCGGCGCCATCCCCGCCGAACTGATGGAAAGCGAGTTCTTCGGCCACA
AGAAGGGCAGCTTCACTGGCGCGCATGCCGACAAGCCCGGCCTGTTCCAGGCCGCGCATGGCGGCACGCTGTTTCTGGAC
GAGGTGGCCGAATTGCCGCTGCAGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAATCGGTGCGCCCGGTGGGCGC
CTCCAGCGAGTCGCTGGTGGACGTGCGCATTCTCTCGGCCACCCACAAGAACCTGGGCGATCTGGTCTCCGACGGCCGTT
TTCGCCACGACCTGTACTACCGCATCAACGTCATCGAACTGCGCGTGCCGCCGCTGCGCGAACGCGGCGGCGACCTGCCG
CAACTGGCCGCGGCCATCATCGCGCGCCTGGCACATAGCCACGGCCGGCCGATTCCGCTGCTCACCCAGTCCGCGCTCGA
CGCGCTGGACCAATATGGCTTTCCCGGCAACGTGCGCGAGCTGGAAAACATCCTAGAACGCGCCCTGGCCCTGGCCGAAG
ACGACCAGATCAGCGCCACCGACCTGCGCCTGCCCGCCCACGGCGGCCATCGCCTGGCCGCCACCCCCGGCAGCGCCGCC
GTCGAACCCCGCGAAGCGGTGGTCGACATCGACCCCGCCTCGGCCGCCCTGCCTTCCTACATCGAGCAACTGGAGCGCGC
CGCGATCCAGAAGGCGCTGGAAGAAAACCGCTGGAACAAGACCAAGACCGCAGCGCAGCTGGGCATCACGTTTCGGGCGT
TGCGTTATAAATTGAAGAAGTTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(421-461)

Response regulator receiver domain (Response_reg)

(8-115)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.261

99.138

0.627
  pilR Acinetobacter baumannii strain A118

48.922

100

0.489

Multiple sequence alignment