Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   G6536_RS14630 Genome accession   NZ_CP049330
Coordinates   2809761..2810579 (+) Length   272 a.a.
NCBI ID   WP_016885504.1    Uniprot ID   -
Organism   Bacillus licheniformis strain CP6     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2804761..2815579
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G6536_RS14610 (G6536_14810) - 2805000..2806049 (-) 1050 WP_003183797.1 NAD(P)/FAD-dependent oxidoreductase -
  G6536_RS14615 (G6536_14815) nikA 2806339..2807961 (+) 1623 WP_016885502.1 nickel ABC transporter substrate-binding protein -
  G6536_RS14620 (G6536_14820) nikB 2807971..2808915 (+) 945 WP_003183800.1 nickel ABC transporter permease subunit NikB -
  G6536_RS14625 (G6536_14825) nikC 2808912..2809745 (+) 834 WP_016885503.1 nickel ABC transporter permease subunit NikC -
  G6536_RS14630 (G6536_14830) amiE 2809761..2810579 (+) 819 WP_016885504.1 nickel import ATP-binding protein NikD Regulator
  G6536_RS14635 (G6536_14835) nikE 2810621..2811439 (+) 819 WP_025805007.1 nickel import ATP-binding protein NikE -
  G6536_RS14640 (G6536_14840) - 2811752..2812588 (+) 837 WP_003183808.1 MerR family transcriptional regulator -
  G6536_RS14645 (G6536_14845) - 2812645..2814000 (+) 1356 WP_003183810.1 MATE family efflux transporter -
  G6536_RS14650 (G6536_14850) - 2814314..2815321 (+) 1008 Protein_2881 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 30131.87 Da        Isoelectric Point: 8.4839

>NTDB_id=373600 G6536_RS14630 WP_016885504.1 2809761..2810579(+) (amiE) [Bacillus licheniformis strain CP6]
MGTEQSTVLRVRDLHVQVNNQKGHSTLVQDINFDLKRGQVLGLIGESGCGKTVTSISILQTLDPKTTKVEGSIALRGREL
NGLADKEMRKIRGKDIAYIMQNPMNAFTPVFTIGQQMTESIRSHTSFSKKQAKELATEALHHVNLPHPAKLLHSYPFQLS
GGMLQRVMIAIASCLKPAILIADEPTTALDVYNQKTVLKYLDGMRSDFGTAILLISHDLGVIAEMADEVAVMQNGRIVEN
RDVFQLFDEPKHEYTKKLLSARLTLPVDQLAT

Nucleotide


Download         Length: 819 bp        

>NTDB_id=373600 G6536_RS14630 WP_016885504.1 2809761..2810579(+) (amiE) [Bacillus licheniformis strain CP6]
TTGGGAACAGAACAATCAACGGTGCTTCGAGTCAGAGATTTGCATGTACAGGTTAACAACCAAAAAGGACATTCAACCCT
TGTGCAAGACATCAATTTTGATTTGAAGCGCGGCCAAGTCCTTGGTCTGATTGGTGAGAGCGGTTGCGGAAAAACGGTAA
CAAGCATTTCTATTCTTCAGACGCTTGATCCAAAAACAACTAAGGTGGAAGGAAGTATTGCATTGCGAGGCCGTGAATTG
AACGGATTAGCAGATAAGGAAATGCGTAAAATCCGCGGCAAAGATATTGCCTATATCATGCAAAATCCGATGAACGCTTT
TACACCCGTTTTTACGATAGGACAGCAAATGACCGAATCGATTCGCTCTCATACATCTTTTAGCAAGAAACAGGCGAAAG
AGCTTGCGACCGAAGCATTGCATCATGTTAACCTACCCCACCCTGCTAAACTTTTACATTCTTATCCTTTTCAATTAAGC
GGCGGAATGCTTCAACGGGTCATGATTGCAATTGCATCATGCTTAAAGCCTGCCATTCTCATCGCGGATGAGCCTACCAC
TGCGCTCGACGTGTATAATCAGAAGACGGTGCTGAAATATTTAGACGGCATGCGTTCTGACTTCGGCACGGCGATTTTGC
TTATATCTCATGACCTCGGCGTTATTGCTGAAATGGCGGATGAAGTTGCTGTGATGCAGAATGGGAGAATTGTAGAAAAT
AGAGATGTGTTTCAGCTGTTTGATGAACCAAAGCATGAATATACTAAGAAGCTATTAAGTGCACGGTTGACATTGCCGGT
GGATCAACTTGCGACTTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(29-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

40.37

99.265

0.401
  oppD Streptococcus mutans UA159

40.385

95.588

0.386
  amiE Streptococcus thermophilus LMG 18311

40.076

96.324

0.386
  amiE Streptococcus thermophilus LMD-9

40.076

96.324

0.386

Multiple sequence alignment