Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   FNU76_RS11230 Genome accession   NZ_CP041730
Coordinates   2473407..2474897 (-) Length   496 a.a.
NCBI ID   WP_144278280.1    Uniprot ID   -
Organism   Chitinimonas arctica strain R3-44     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2468407..2479897
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNU76_RS11200 (FNU76_11200) - 2468834..2469151 (-) 318 WP_144278277.1 type II toxin-antitoxin system PrlF family antitoxin -
  FNU76_RS11205 (FNU76_11205) - 2469693..2470550 (+) 858 WP_308418631.1 Fic family protein -
  FNU76_RS11210 (FNU76_11210) - 2470651..2471259 (-) 609 WP_144278278.1 nucleotidyltransferase domain-containing protein -
  FNU76_RS11215 (FNU76_11215) - 2471709..2472446 (-) 738 WP_223879310.1 Fic family protein -
  FNU76_RS11225 (FNU76_11225) - 2472745..2473350 (+) 606 WP_144278279.1 outer membrane beta-barrel protein -
  FNU76_RS11230 (FNU76_11230) comM 2473407..2474897 (-) 1491 WP_144278280.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  FNU76_RS11235 (FNU76_11235) - 2475423..2476478 (+) 1056 WP_223879311.1 sensor histidine kinase -
  FNU76_RS11240 (FNU76_11240) - 2476444..2477208 (+) 765 WP_144278281.1 LytTR family DNA-binding domain-containing protein -
  FNU76_RS11245 (FNU76_11245) - 2477216..2478028 (-) 813 WP_179958437.1 alpha/beta fold hydrolase -
  FNU76_RS11250 (FNU76_11250) - 2478267..2479187 (+) 921 WP_144278283.1 alpha/beta hydrolase -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 53626.61 Da        Isoelectric Point: 8.2719

>NTDB_id=373600 FNU76_RS11230 WP_144278280.1 2473407..2474897(-) (comM) [Chitinimonas arctica strain R3-44]
MSLAVLFSRALKGVDAPEVMVEAHLANGLPSFTIVGLPDVGVKEARDRVRAAIQTAHYEFPQRRITVNLAPADLPKESGR
FDLAIALGILAANRQIPAHHLADYEFVGELALTGAIRPIRGALAMSLAAGKAGRRFILPRENAEEAALIDRSQVYGADSL
LAVCAHLTGHTPLTREPKPTLQYLADYPDLADVKGQLQAKRALEIAAAGAHSLLMVGPPGTGKSMLASRLPGLLPPMDEA
VALETAALQSISSAGFQPRHFGQRPFRAPHHTASAVSLVGGGSNPRPGEISLAHQGVLFLDELPEFDRKVLEVLREPLEN
RRIVISRAAHQAEFPAAFQLVAAMNPCPCGYHGHPNGRCRCSPEKVARYIAKLSGPFMDRIDLLIEVPAVSETDLSNIQS
GDESARVRQRVMVARERQLARQGMENARLGSRELDSVAELDEAGRQLLSTAMRRLDLSARAYHRILRVARTIADLAGDDC
IQAGQVAEAVQYRRAL

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=373600 FNU76_RS11230 WP_144278280.1 2473407..2474897(-) (comM) [Chitinimonas arctica strain R3-44]
ATGTCGCTGGCCGTGCTATTCAGCCGAGCATTGAAGGGTGTGGACGCGCCGGAAGTCATGGTCGAAGCCCATCTGGCCAA
TGGATTGCCAAGCTTTACCATCGTCGGCTTGCCGGATGTGGGGGTGAAGGAGGCACGCGACCGGGTCCGCGCCGCCATCC
AGACCGCTCATTACGAATTTCCACAGCGTCGTATCACGGTGAACCTGGCCCCGGCCGATCTCCCCAAGGAGAGCGGCCGA
TTCGACCTGGCCATCGCATTGGGCATCCTGGCCGCCAACAGGCAGATCCCCGCCCACCATCTGGCCGACTACGAATTTGT
CGGGGAGTTGGCGCTGACCGGAGCAATACGGCCTATCCGGGGGGCGCTGGCCATGTCGCTCGCCGCGGGAAAAGCCGGCC
GCCGCTTTATCCTGCCGAGGGAAAATGCCGAAGAAGCGGCCTTGATCGACCGCAGCCAGGTCTATGGCGCGGACAGCCTG
TTGGCGGTGTGCGCCCATTTGACCGGCCATACCCCACTCACGCGCGAGCCCAAGCCCACGCTGCAATACTTGGCCGACTA
TCCCGATCTAGCCGACGTCAAGGGTCAGCTGCAGGCCAAGCGCGCATTGGAAATCGCGGCAGCCGGCGCCCATTCCCTCC
TGATGGTGGGACCGCCCGGCACCGGAAAATCCATGCTCGCGTCGCGCCTGCCCGGCTTATTGCCGCCGATGGACGAGGCG
GTGGCGTTGGAGACCGCTGCCCTGCAATCGATCTCCTCGGCCGGGTTCCAGCCAAGACACTTCGGCCAGCGGCCTTTTCG
CGCACCGCATCACACCGCCTCCGCGGTCTCTTTGGTGGGCGGGGGTTCAAACCCCAGGCCGGGAGAGATCAGTCTGGCGC
ACCAAGGGGTGTTGTTTCTCGACGAATTGCCCGAATTCGACCGCAAGGTCCTGGAAGTCTTGCGCGAACCACTGGAAAAC
CGCCGCATCGTCATTTCCCGCGCGGCCCACCAGGCTGAATTTCCAGCCGCTTTTCAGTTGGTTGCCGCCATGAATCCCTG
CCCCTGCGGCTACCATGGGCACCCGAATGGCCGTTGCCGCTGCTCGCCGGAAAAAGTGGCGCGCTATATCGCCAAGCTTT
CCGGCCCCTTTATGGATCGCATCGATCTATTGATCGAGGTGCCGGCAGTGAGCGAGACCGACTTGAGCAATATTCAATCG
GGGGATGAAAGCGCACGGGTACGTCAGCGGGTCATGGTTGCCCGGGAACGGCAGCTGGCACGCCAGGGAATGGAGAACGC
GCGGCTTGGCAGCCGCGAACTGGACAGCGTGGCCGAGTTGGACGAAGCGGGGCGGCAGTTGCTGAGCACCGCCATGCGGC
GCCTGGATCTATCGGCGCGGGCCTACCACCGTATCTTGCGGGTGGCTCGCACCATTGCCGACCTGGCGGGTGATGATTGC
ATTCAAGCCGGCCAAGTGGCCGAGGCCGTGCAATACCGGCGAGCACTCTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-394)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.747

99.798

0.546
  comM Haemophilus influenzae Rd KW20

53

100

0.534
  comM Vibrio campbellii strain DS40M4

53.535

99.798

0.534
  comM Glaesserella parasuis strain SC1401

52

100

0.524
  comM Legionella pneumophila str. Paris

50.4

100

0.508
  comM Legionella pneumophila strain ERS1305867

50.4

100

0.508
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.429

100

0.472

Multiple sequence alignment