Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   E3226_RS04285 Genome accession   NZ_CP041713
Coordinates   900508..902031 (+) Length   507 a.a.
NCBI ID   WP_135842385.1    Uniprot ID   -
Organism   Legionella geestiana strain HL-0438-4026     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 895508..907031
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3226_RS04250 (E3226_003965) - 895752..897299 (-) 1548 WP_051550834.1 M14 family zinc carboxypeptidase -
  E3226_RS04255 (E3226_003970) - 897363..898136 (-) 774 WP_135842384.1 aminotransferase class IV -
  E3226_RS04260 (E3226_003975) - 898142..898327 (-) 186 WP_028385981.1 hypothetical protein -
  E3226_RS04265 (E3226_003980) - 898557..899120 (+) 564 WP_035901908.1 5-formyltetrahydrofolate cyclo-ligase -
  E3226_RS04270 (E3226_003985) - 899117..899590 (+) 474 WP_028385983.1 EVE domain-containing protein -
  E3226_RS04275 (E3226_003990) - 899764..900102 (-) 339 WP_028385984.1 P-II family nitrogen regulator -
  E3226_RS04280 (E3226_003995) - 900224..900466 (+) 243 WP_028385985.1 accessory factor UbiK family protein -
  E3226_RS04285 (E3226_004000) comM 900508..902031 (+) 1524 WP_135842385.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  E3226_RS04290 (E3226_004005) - 902017..902913 (-) 897 WP_135842386.1 aspartate carbamoyltransferase catalytic subunit -
  E3226_RS04295 (E3226_004010) ruvX 902920..903327 (-) 408 WP_028385988.1 Holliday junction resolvase RuvX -
  E3226_RS04300 (E3226_004015) - 903387..903950 (-) 564 WP_028385989.1 YqgE/AlgH family protein -
  E3226_RS04305 (E3226_004020) - 904271..905797 (+) 1527 WP_035901912.1 FMN-binding glutamate synthase family protein -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54422.41 Da        Isoelectric Point: 7.6674

>NTDB_id=373350 E3226_RS04285 WP_135842385.1 900508..902031(+) (comM) [Legionella geestiana strain HL-0438-4026]
MTSHLAFSFTRSIIGMQAKTVSVEVHISPGLPAFTIVGLPETAVRESRDRVRSAIQNSQFEFPWRHITVNLAPADLPKTG
SGFDLPIAIGILAASGQIPPGCLGDYEFIGELALSGNLRGVPGILPAVIAAKQDGRHLIIAHENGAEAGLAATGGVSAAG
SLREVCAFLCGDAEPAPLPRQAAPAIDEGAPDWSDVKGQQHAKYALEIAAAGGHSVLMSGTPGSGKTMLARRFSTLLPWL
DETRALECAAIRSVHGRPLDYSRWREPPFRAPHHTASAVAMVGGGNPPKPGEISLAHHGVLFLDELPEFHKQVLETLREP
LESGTVHISRAAATAEFPARFQLVAAMNPCPCGQWGNPNATCVCPPDKITRYFSRLSAPLMDRIDMHLAIQPVKLELLTA
SRPESVRESPRIREQVEALQRVQFARQGCLNAALGPAECESVCALDEAGRTFVAQAMERLKLSARSFHRLLKVARTIADK
KEEAAVSVSALQQALTFRDNLRPSVRQ

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=373350 E3226_RS04285 WP_135842385.1 900508..902031(+) (comM) [Legionella geestiana strain HL-0438-4026]
ATGACATCGCACCTTGCGTTCAGTTTCACGCGCAGCATTATCGGCATGCAGGCTAAAACCGTTTCGGTAGAAGTGCATAT
TTCACCCGGCCTGCCCGCTTTTACCATTGTCGGCCTGCCGGAAACGGCGGTGCGCGAAAGCCGCGACCGGGTCAGAAGCG
CCATCCAGAACAGTCAATTTGAATTTCCGTGGCGCCATATTACCGTTAATCTGGCACCTGCCGACCTCCCCAAAACCGGC
AGCGGTTTTGATCTGCCGATTGCCATCGGCATACTTGCGGCCTCCGGCCAGATACCGCCAGGCTGCCTTGGCGATTATGA
ATTTATTGGCGAGCTGGCCTTAAGCGGCAACCTTCGGGGAGTGCCTGGTATTCTGCCTGCGGTCATTGCAGCAAAACAGG
ACGGTCGGCATCTGATTATCGCTCACGAAAATGGCGCGGAAGCGGGACTTGCGGCTACAGGCGGCGTATCAGCCGCAGGT
TCCCTGCGCGAAGTATGCGCCTTTTTGTGCGGAGACGCAGAACCTGCCCCTCTGCCCCGACAGGCCGCGCCGGCAATTGA
CGAAGGCGCGCCTGACTGGTCGGATGTGAAAGGCCAGCAGCATGCCAAATATGCGCTTGAAATTGCCGCAGCCGGTGGAC
ACAGTGTGCTCATGAGCGGCACGCCTGGCAGCGGTAAAACCATGCTGGCACGCCGCTTCAGCACCCTCCTGCCATGGCTT
GATGAAACGCGGGCGCTTGAATGCGCGGCCATCCGCTCCGTTCATGGCCGTCCGCTCGATTATTCCCGCTGGCGTGAGCC
ACCGTTTCGCGCCCCTCACCATACTGCATCGGCCGTTGCCATGGTCGGCGGCGGTAATCCCCCAAAACCTGGCGAGATTT
CACTCGCGCACCATGGCGTGCTGTTTCTGGATGAATTGCCGGAATTTCATAAACAGGTGCTGGAAACCCTGCGCGAGCCG
CTTGAGTCTGGCACCGTACATATTTCACGTGCCGCGGCCACGGCTGAATTCCCCGCGCGCTTTCAACTGGTAGCGGCGAT
GAATCCCTGCCCGTGCGGTCAATGGGGCAACCCCAATGCCACCTGCGTATGCCCGCCCGATAAAATCACCCGCTATTTCA
GCAGGCTCTCAGCACCTCTGATGGACCGCATCGACATGCATCTGGCCATTCAACCGGTCAAGCTGGAACTCCTGACGGCA
TCAAGGCCTGAGAGCGTGCGGGAAAGCCCGCGCATTCGAGAGCAGGTAGAAGCGTTGCAGAGGGTGCAGTTTGCGCGTCA
GGGGTGCCTCAATGCGGCTCTGGGGCCTGCTGAATGTGAAAGCGTGTGCGCACTCGATGAGGCCGGACGAACGTTTGTGG
CGCAGGCGATGGAGCGCTTAAAGCTCTCTGCGCGCAGTTTTCACCGCCTGCTGAAGGTGGCGCGTACGATTGCCGATAAA
AAGGAAGAAGCGGCGGTTTCCGTATCCGCCCTTCAGCAGGCGCTGACCTTTCGTGACAATCTGCGCCCCTCAGTGCGACA
GTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(23-144)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(408-498)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(192-395)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Legionella pneumophila str. Paris

63.38

98.028

0.621
  comM Legionella pneumophila strain ERS1305867

63.38

98.028

0.621
  comM Vibrio cholerae strain A1552

51.613

97.83

0.505
  comM Haemophilus influenzae Rd KW20

49.116

100

0.493
  comM Vibrio campbellii strain DS40M4

49.9

98.422

0.491
  comM Glaesserella parasuis strain SC1401

47.695

98.422

0.469
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.914

98.817

0.424

Multiple sequence alignment