Detailed information NTG0373116

Bioinformatically predicted

Overview

• Name: comGD
• Type: Machinery gene
• Locus tag: FGF55_RS12375
• Genome accession: NZ_CP041691
• Coordinates: 2531540..2531977 (-)
• Length: 145 a.a.
• NCBI ID: WP_007612572.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain ZJU1
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2526540..2536977

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FGF55_RS12325 (FGF55_12325)	sinI	2526923..2527096 (+)	174	WP_014418369.1	anti-repressor SinI	Regulator
FGF55_RS12330 (FGF55_12330)	sinR	2527130..2527465 (+)	336	WP_003153104.1	transcriptional regulator SinR	Regulator
FGF55_RS12335 (FGF55_12335)	tasA	2527513..2528298 (-)	786	WP_007408329.1	biofilm matrix protein TasA	-
FGF55_RS12340 (FGF55_12340)	sipW	2528363..2528947 (-)	585	WP_014418370.1	signal peptidase I SipW	-
FGF55_RS12345 (FGF55_12345)	tapA	2528919..2529590 (-)	672	WP_014418371.1	amyloid fiber anchoring/assembly protein TapA	-
FGF55_RS12350 (FGF55_12350)	-	2529849..2530178 (+)	330	WP_014418372.1	DUF3889 domain-containing protein	-
FGF55_RS12355 (FGF55_12355)	-	2530219..2530398 (-)	180	WP_003153093.1	YqzE family protein	-
FGF55_RS12360 (FGF55_12360)	comGG	2530455..2530832 (-)	378	WP_014418373.1	competence type IV pilus minor pilin ComGG	Machinery gene
FGF55_RS12365 (FGF55_12365)	comGF	2530833..2531228 (-)	396	WP_014721501.1	competence type IV pilus minor pilin ComGF	-
FGF55_RS12370 (FGF55_12370)	comGE	2531242..2531556 (-)	315	WP_032863566.1	competence type IV pilus minor pilin ComGE	Machinery gene
FGF55_RS12375 (FGF55_12375)	comGD	2531540..2531977 (-)	438	WP_007612572.1	competence type IV pilus minor pilin ComGD	Machinery gene
FGF55_RS12380 (FGF55_12380)	comGC	2531967..2532275 (-)	309	WP_014418376.1	competence type IV pilus major pilin ComGC	Machinery gene
FGF55_RS12385 (FGF55_12385)	comGB	2532280..2533317 (-)	1038	WP_014418377.1	competence type IV pilus assembly protein ComGB	Machinery gene
FGF55_RS12390 (FGF55_12390)	comGA	2533304..2534374 (-)	1071	WP_014418378.1	competence type IV pilus ATPase ComGA	Machinery gene
FGF55_RS12395 (FGF55_12395)	-	2534567..2535517 (-)	951	WP_014418379.1	magnesium transporter CorA family protein	-
FGF55_RS12400 (FGF55_12400)	-	2535662..2536963 (+)	1302	WP_029973873.1	hemolysin family protein	-

Sequence

Protein

• Length: 145 a.a.
• Molecular weight: 16254.76 Da
• Isoelectric Point: 10.1850

>NTDB_id=373116 FGF55_RS12375 WP_007612572.1 2531540..2531977(-) (comGD) [Bacillus amyloliquefaciens strain ZJU1]
MNNNRRTENGFTLLESLIVLSLASVLLTVLFTTVPPVCTHLAVRQKTEQLQKDIQLAQETAIAEHKRTKITFLPKEHKYK
LQSGGRIVERSFDSLHITLVTLPESLEFNEKGHPNSGGKIQLKSAGFTYEITVYLGSGNVHAKRK

Nucleotide

• Length: 438 bp

>NTDB_id=373116 FGF55_RS12375 WP_007612572.1 2531540..2531977(-) (comGD) [Bacillus amyloliquefaciens strain ZJU1]
TTGAACAATAACAGGCGGACAGAAAATGGGTTTACCCTACTTGAAAGCCTGATTGTGTTAAGCCTGGCGTCCGTCCTGCT
GACGGTTTTGTTCACGACGGTTCCGCCGGTCTGCACCCACCTTGCCGTGCGGCAAAAAACAGAACAGCTCCAAAAAGATA
TTCAGCTTGCTCAGGAAACGGCTATCGCAGAACATAAAAGAACAAAAATCACTTTTCTTCCAAAAGAGCATAAATACAAA
CTGCAGTCAGGCGGAAGGATTGTCGAGCGTTCTTTTGATTCGCTTCACATTACGCTTGTGACTTTACCGGAGAGCCTTGA
ATTTAACGAAAAAGGCCATCCGAATTCGGGAGGAAAGATACAATTGAAGAGCGCCGGGTTCACCTATGAGATCACAGTTT
ACTTAGGGAGCGGAAATGTCCATGCTAAACGGAAATAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (5-31)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGD	Bacillus subtilis subsp. subtilis str. 168	55.479	100	0.559