Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   FGF55_RS12330 Genome accession   NZ_CP041691
Coordinates   2527130..2527465 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain ZJU1     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2522130..2532465
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGF55_RS12310 (FGF55_12310) gcvT 2522736..2523836 (-) 1101 WP_014418366.1 glycine cleavage system aminomethyltransferase GcvT -
  FGF55_RS12315 (FGF55_12315) - 2524260..2525930 (+) 1671 WP_021494309.1 SNF2-related protein -
  FGF55_RS12320 (FGF55_12320) - 2525952..2526746 (+) 795 WP_014418368.1 YqhG family protein -
  FGF55_RS12325 (FGF55_12325) sinI 2526923..2527096 (+) 174 WP_014418369.1 anti-repressor SinI Regulator
  FGF55_RS12330 (FGF55_12330) sinR 2527130..2527465 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  FGF55_RS12335 (FGF55_12335) tasA 2527513..2528298 (-) 786 WP_007408329.1 biofilm matrix protein TasA -
  FGF55_RS12340 (FGF55_12340) sipW 2528363..2528947 (-) 585 WP_014418370.1 signal peptidase I SipW -
  FGF55_RS12345 (FGF55_12345) tapA 2528919..2529590 (-) 672 WP_014418371.1 amyloid fiber anchoring/assembly protein TapA -
  FGF55_RS12350 (FGF55_12350) - 2529849..2530178 (+) 330 WP_014418372.1 DUF3889 domain-containing protein -
  FGF55_RS12355 (FGF55_12355) - 2530219..2530398 (-) 180 WP_003153093.1 YqzE family protein -
  FGF55_RS12360 (FGF55_12360) comGG 2530455..2530832 (-) 378 WP_014418373.1 competence type IV pilus minor pilin ComGG Machinery gene
  FGF55_RS12365 (FGF55_12365) comGF 2530833..2531228 (-) 396 WP_014721501.1 competence type IV pilus minor pilin ComGF -
  FGF55_RS12370 (FGF55_12370) comGE 2531242..2531556 (-) 315 WP_032863566.1 competence type IV pilus minor pilin ComGE Machinery gene
  FGF55_RS12375 (FGF55_12375) comGD 2531540..2531977 (-) 438 WP_007612572.1 competence type IV pilus minor pilin ComGD Machinery gene
  FGF55_RS12380 (FGF55_12380) comGC 2531967..2532275 (-) 309 WP_014418376.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=373113 FGF55_RS12330 WP_003153104.1 2527130..2527465(+) (sinR) [Bacillus amyloliquefaciens strain ZJU1]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=373113 FGF55_RS12330 WP_003153104.1 2527130..2527465(+) (sinR) [Bacillus amyloliquefaciens strain ZJU1]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCAATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991

Multiple sequence alignment