Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGE   Type   Machinery gene
Locus tag   FGF55_RS12370 Genome accession   NZ_CP041691
Coordinates   2531242..2531556 (-) Length   104 a.a.
NCBI ID   WP_032863566.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain ZJU1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2526242..2536556
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGF55_RS12325 (FGF55_12325) sinI 2526923..2527096 (+) 174 WP_014418369.1 anti-repressor SinI Regulator
  FGF55_RS12330 (FGF55_12330) sinR 2527130..2527465 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  FGF55_RS12335 (FGF55_12335) tasA 2527513..2528298 (-) 786 WP_007408329.1 biofilm matrix protein TasA -
  FGF55_RS12340 (FGF55_12340) sipW 2528363..2528947 (-) 585 WP_014418370.1 signal peptidase I SipW -
  FGF55_RS12345 (FGF55_12345) tapA 2528919..2529590 (-) 672 WP_014418371.1 amyloid fiber anchoring/assembly protein TapA -
  FGF55_RS12350 (FGF55_12350) - 2529849..2530178 (+) 330 WP_014418372.1 DUF3889 domain-containing protein -
  FGF55_RS12355 (FGF55_12355) - 2530219..2530398 (-) 180 WP_003153093.1 YqzE family protein -
  FGF55_RS12360 (FGF55_12360) comGG 2530455..2530832 (-) 378 WP_014418373.1 competence type IV pilus minor pilin ComGG Machinery gene
  FGF55_RS12365 (FGF55_12365) comGF 2530833..2531228 (-) 396 WP_014721501.1 competence type IV pilus minor pilin ComGF -
  FGF55_RS12370 (FGF55_12370) comGE 2531242..2531556 (-) 315 WP_032863566.1 competence type IV pilus minor pilin ComGE Machinery gene
  FGF55_RS12375 (FGF55_12375) comGD 2531540..2531977 (-) 438 WP_007612572.1 competence type IV pilus minor pilin ComGD Machinery gene
  FGF55_RS12380 (FGF55_12380) comGC 2531967..2532275 (-) 309 WP_014418376.1 competence type IV pilus major pilin ComGC Machinery gene
  FGF55_RS12385 (FGF55_12385) comGB 2532280..2533317 (-) 1038 WP_014418377.1 competence type IV pilus assembly protein ComGB Machinery gene
  FGF55_RS12390 (FGF55_12390) comGA 2533304..2534374 (-) 1071 WP_014418378.1 competence type IV pilus ATPase ComGA Machinery gene
  FGF55_RS12395 (FGF55_12395) - 2534567..2535517 (-) 951 WP_014418379.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 104 a.a.        Molecular weight: 11920.92 Da        Isoelectric Point: 5.8321

>NTDB_id=373115 FGF55_RS12370 WP_032863566.1 2531242..2531556(-) (comGE) [Bacillus amyloliquefaciens strain ZJU1]
MLNGNKGFSTIETLSAMAIWLFLMTSIIPVWTGMMTDGLKIEDRQEAYQLLQKHISTYMMTGKKPPSPDVKWKEDGEYYK
VCAADRGEKEMCLSILKTDWLYAS

Nucleotide


Download         Length: 315 bp        

>NTDB_id=373115 FGF55_RS12370 WP_032863566.1 2531242..2531556(-) (comGE) [Bacillus amyloliquefaciens strain ZJU1]
ATGCTAAACGGAAATAAGGGGTTCTCTACTATTGAAACGCTATCAGCAATGGCCATTTGGCTGTTCCTTATGACGTCTAT
CATTCCGGTCTGGACGGGCATGATGACAGATGGTCTGAAAATAGAAGATCGCCAGGAAGCGTACCAGCTTCTTCAGAAAC
ATATCAGCACTTATATGATGACCGGAAAAAAGCCGCCGTCTCCCGATGTGAAGTGGAAGGAGGATGGTGAGTATTACAAA
GTGTGTGCGGCTGACCGCGGTGAAAAAGAAATGTGCCTCAGCATTCTCAAAACAGACTGGCTTTACGCTTCTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGE Bacillus subtilis subsp. subtilis str. 168

44.348

100

0.49

Multiple sequence alignment