Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   FOD75_RS00230 Genome accession   NZ_CP041676
Coordinates   47606..49756 (+) Length   716 a.a.
NCBI ID   WP_144226436.1    Uniprot ID   -
Organism   Limosilactobacillus reuteri strain LL7     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 42606..54756
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOD75_RS11560 - 43012..43176 (+) 165 WP_172616787.1 hypothetical protein -
  FOD75_RS12050 - 43203..43334 (+) 132 WP_257496822.1 hypothetical protein -
  FOD75_RS00215 (FOD75_00215) - 43505..44845 (-) 1341 WP_144226431.1 IS4-like element ISLre1 family transposase -
  FOD75_RS00220 (FOD75_00220) - 45143..46195 (+) 1053 WP_231122869.1 GHKL domain-containing protein -
  FOD75_RS00225 (FOD75_00225) - 46203..46976 (+) 774 WP_144226434.1 LytR/AlgR family response regulator transcription factor -
  FOD75_RS11565 - 47171..47329 (+) 159 WP_172616788.1 hypothetical protein -
  FOD75_RS00230 (FOD75_00230) comA 47606..49756 (+) 2151 WP_144226436.1 peptide cleavage/export ABC transporter Regulator
  FOD75_RS00235 (FOD75_00235) - 50048..51016 (+) 969 WP_144226439.1 IS30 family transposase -
  FOD75_RS00240 (FOD75_00240) - 51018..51209 (-) 192 WP_144226441.1 hypothetical protein -
  FOD75_RS00245 (FOD75_00245) - 51488..51916 (-) 429 WP_035151936.1 OsmC family protein -
  FOD75_RS00250 (FOD75_00250) - 51985..52980 (-) 996 WP_035151933.1 D-2-hydroxyacid dehydrogenase -
  FOD75_RS00255 (FOD75_00255) - 52982..54169 (-) 1188 WP_144226443.1 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme -

Sequence

Protein


Download         Length: 716 a.a.        Molecular weight: 81120.21 Da        Isoelectric Point: 7.0304

>NTDB_id=372960 FOD75_RS00230 WP_144226436.1 47606..49756(+) (comA) [Limosilactobacillus reuteri strain LL7]
MKINYLHYVAQVDEADCGVASLAMILRNFGSVYPIAKLRDLARTTKQGTTALGLVKAAKHLGLDVIPIQADISLFDDPEI
TYPLIAHVIKDDLLHYCVVFKADQDYIYVADPDPATKVQKMTRDEFDRLWSGVCLLFSPAKGYTPQKEPLAGLTTMFQQL
TNYKKDISGIVIAAMLITFISIVGSYYLQLIIDRFIPSKNINGLTILAGSLLVVYVFNSLFNYLRDVLLTRLDQKLTSQI
SLRYIHHVYRLPMRFFSTRKTGEITSRFNDINKIIDALSSTIISMFLDVGVMVIIGIVLSLYDRSLFLTTISTIPIYVII
IYAFNKRFAKLDQEQMESNAQLSSAIIEDLKGVETLKVLQLENIRYKNVEKQFADFLRKNLTYVKTKSFQDAIKMWIQYG
LVTIILFQGAILVIQDRLSIGTLMAFNALLAFFVSPLQNIINLQPKLQEAKVANNRLNEVLQVDTEKSDTNSQDQTDLIG
PINIQHVDYSYEYSRPILQDINLQIGCNDKLAIVGLSGSGKSTLAKLLVGFYLPTQGQIEFNQHKTTEINLCDIRQYVHY
LPQSPQLFSGTIKDNLLMGLDHEVSAEEIDNACKLALIYNDIQEMPLKYETKLDEEATALSGGQKQRLTIARALLTSARV
LIFDESTSSLDPITEKRIVENLLSIKDHTMIFIAHRLSIAKKVNRVVVMRDGKIIEQGTHQELLNHHQEYYNLWNA

Nucleotide


Download         Length: 2151 bp        

>NTDB_id=372960 FOD75_RS00230 WP_144226436.1 47606..49756(+) (comA) [Limosilactobacillus reuteri strain LL7]
ATGAAAATCAATTATCTTCATTATGTAGCCCAAGTTGATGAAGCAGATTGTGGGGTTGCCTCCTTAGCGATGATTTTGCG
CAATTTTGGCTCTGTTTATCCAATCGCAAAATTACGTGACCTAGCCCGGACGACTAAGCAAGGAACTACCGCCTTAGGAC
TTGTAAAAGCAGCAAAGCATCTTGGATTAGACGTTATACCCATTCAAGCAGATATATCATTGTTTGATGATCCTGAAATT
ACTTACCCATTGATCGCGCATGTGATTAAGGATGATTTACTTCATTACTGTGTTGTCTTTAAGGCTGATCAAGATTACAT
CTATGTAGCTGATCCAGATCCTGCTACGAAAGTACAAAAAATGACGCGGGATGAATTTGATCGTTTATGGTCAGGCGTAT
GTTTGCTTTTTTCGCCTGCTAAGGGGTATACACCGCAAAAAGAACCTTTAGCTGGATTAACGACGATGTTTCAACAATTA
ACTAATTATAAAAAAGATATATCCGGAATTGTTATTGCGGCAATGCTAATTACTTTCATCAGCATCGTCGGTTCATACTA
TCTCCAATTAATTATTGATCGGTTTATTCCCTCGAAAAATATTAATGGCTTAACGATCCTTGCTGGTAGTTTATTAGTAG
TGTATGTGTTTAATTCTCTTTTTAATTATCTGCGGGATGTTCTTTTGACTAGGCTGGATCAAAAACTGACATCACAAATA
AGTCTTAGATATATTCACCATGTTTATCGTCTACCGATGCGATTTTTCTCCACAAGAAAAACGGGAGAAATTACTTCACG
GTTTAATGACATTAATAAGATTATTGATGCCTTATCAAGCACTATTATTTCAATGTTCTTAGACGTTGGCGTGATGGTGA
TTATAGGAATTGTTCTTTCTTTATATGATCGGTCATTATTTTTAACTACAATTAGTACCATTCCGATTTATGTCATTATC
ATTTATGCCTTTAATAAGCGCTTTGCTAAACTTGATCAGGAACAGATGGAGAGTAATGCTCAATTAAGTTCTGCAATTAT
TGAGGATTTAAAAGGCGTAGAGACGTTGAAGGTGCTGCAACTTGAAAATATCCGTTATAAAAATGTTGAAAAGCAATTTG
CGGATTTTTTACGAAAGAATCTAACATATGTTAAAACTAAATCTTTTCAGGATGCAATTAAAATGTGGATTCAATACGGT
TTAGTAACAATCATTCTTTTTCAAGGAGCAATTTTGGTAATTCAAGACCGATTAAGTATTGGGACATTGATGGCCTTTAA
TGCATTATTAGCCTTTTTTGTCAGTCCGTTGCAAAATATTATTAATCTTCAACCTAAACTCCAAGAAGCTAAAGTAGCGA
ATAATCGATTGAATGAAGTTCTGCAAGTTGATACCGAAAAGTCAGATACGAATTCTCAGGATCAAACAGATTTAATAGGG
CCGATAAACATTCAACATGTTGACTATTCATATGAATATAGTCGTCCAATTTTACAAGATATCAATCTTCAAATTGGTTG
TAATGACAAATTGGCAATTGTAGGGTTGAGCGGTTCTGGTAAATCGACCTTGGCAAAGTTATTAGTTGGCTTTTATTTAC
CTACTCAAGGGCAGATAGAATTTAATCAGCATAAAACAACAGAGATTAATCTTTGCGATATTAGACAATATGTACATTAC
TTACCCCAATCGCCACAATTATTTTCGGGAACAATCAAAGATAACTTGTTAATGGGATTAGACCATGAAGTATCTGCTGA
AGAAATCGATAATGCATGTAAATTGGCATTAATCTATAACGATATTCAAGAGATGCCCTTAAAATATGAAACAAAACTAG
ATGAAGAAGCAACCGCATTATCTGGTGGTCAAAAACAACGCTTGACGATTGCACGAGCACTCCTAACTTCTGCGCGTGTT
TTAATTTTTGATGAATCAACAAGTAGCTTAGATCCAATTACTGAAAAAAGAATCGTTGAAAATTTGCTTAGTATTAAAGA
CCACACAATGATTTTTATTGCCCACCGCCTTTCAATTGCCAAAAAGGTCAATAGAGTGGTAGTAATGCGCGACGGAAAAA
TCATTGAGCAGGGTACTCACCAGGAACTTTTGAATCATCATCAAGAATACTATAATTTGTGGAATGCATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(170-437)

ABC transporter (ABC_tran)

(498-648)

Peptidase C39 family (Peptidase_C39)

(7-141)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus mitis NCTC 12261

48.607

100

0.487
  comA Streptococcus pneumoniae TIGR4

48.468

100

0.486
  comA Streptococcus pneumoniae Rx1

48.468

100

0.486
  comA Streptococcus pneumoniae D39

48.468

100

0.486
  comA Streptococcus pneumoniae R6

48.468

100

0.486
  comA Streptococcus mitis SK321

48.189

100

0.483
  comA Streptococcus gordonii str. Challis substr. CH1

46.518

100

0.466
  comA/nlmT Streptococcus mutans UA159

46.564

99.581

0.464

Multiple sequence alignment