Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   FOG18_RS04565 Genome accession   NZ_CP041668
Coordinates   974822..976333 (-) Length   503 a.a.
NCBI ID   WP_143866534.1    Uniprot ID   -
Organism   Legionella israelensis strain L18-01051     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 969822..981333
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOG18_RS04545 (FOG18_04545) radC 970737..971420 (-) 684 WP_135059771.1 DNA repair protein RadC -
  FOG18_RS04550 (FOG18_04550) coaBC 971488..972687 (+) 1200 WP_143866530.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  FOG18_RS04555 (FOG18_04555) dut 972823..973281 (+) 459 WP_058500454.1 dUTP diphosphatase -
  FOG18_RS04560 (FOG18_04560) - 973282..974667 (+) 1386 WP_143866533.1 phosphomannomutase/phosphoglucomutase -
  FOG18_RS04565 (FOG18_04565) comM 974822..976333 (-) 1512 WP_143866534.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  FOG18_RS04570 (FOG18_04570) - 976371..976634 (-) 264 WP_058500457.1 accessory factor UbiK family protein -
  FOG18_RS04575 (FOG18_04575) - 976953..977291 (+) 339 WP_058500529.1 P-II family nitrogen regulator -
  FOG18_RS04580 (FOG18_04580) - 977440..977904 (-) 465 WP_058500459.1 EVE domain-containing protein -
  FOG18_RS04585 (FOG18_04585) - 977901..978476 (-) 576 WP_135061413.1 5-formyltetrahydrofolate cyclo-ligase -
  FOG18_RS04590 (FOG18_04590) - 978725..978904 (+) 180 WP_058500461.1 hypothetical protein -
  FOG18_RS04595 (FOG18_04595) - 978976..979785 (+) 810 WP_143866536.1 aminotransferase class IV -
  FOG18_RS04600 (FOG18_04600) - 979883..980560 (-) 678 WP_143866538.1 TVP38/TMEM64 family protein -
  FOG18_RS04605 (FOG18_04605) - 980669..981115 (+) 447 WP_143866540.1 DUF1499 domain-containing protein -

Sequence

Protein


Download         Length: 503 a.a.        Molecular weight: 55142.59 Da        Isoelectric Point: 8.2867

>NTDB_id=372931 FOG18_RS04565 WP_143866534.1 974822..976333(-) (comM) [Legionella israelensis strain L18-01051]
MNLAIIKTRSAVGIVARSVSVEVHLSNGLPAFTIVGLAETAVKESKDRVRSAIINSQFEFPCRKITVNLAPADLPKSGSG
FDLPIAIGILTASGQISQQKLADHEFIGELALNGHLRGVTAIIPIVLAAFKEKQQLIIAHDNEEEASLAGHQNVYTAHHL
REVCSYLCRDTTLQTLPPRPEVTRDDQKLDWSEVKGQPHAKHALEIAACGGHSVLLSGAPGSGKTMLAKRFATLLPDLSE
NEALECAAIHSIRGKLPNFQQWRIPPFRSPHHTASPVALVGGGNPPKPGEISLAHCGVLFLDELPEFNRHVLETLREPLE
SGHICISRAAIQMEFPAHFQLIAAMNPCPCGQWGNPQADCLCSPDRISRYLGKLSAPLLDRIDMQIHVYPLSKEELIKPN
EQKENQSAVLREKVASIRKTQWLRQDCLNAHLSAKACEQLCSLGSPEQQFLSKAMDKLKLSARSYHRLLKVARTIADMKQ
QNSVSVSHLQQALSFKQALQAPK

Nucleotide


Download         Length: 1512 bp        

>NTDB_id=372931 FOG18_RS04565 WP_143866534.1 974822..976333(-) (comM) [Legionella israelensis strain L18-01051]
ATGAACCTCGCCATCATTAAAACGCGCAGTGCTGTGGGCATTGTCGCACGATCAGTCTCTGTAGAAGTTCACCTCTCCAA
TGGTCTTCCTGCTTTCACCATTGTGGGACTGGCTGAAACGGCTGTGAAGGAAAGCAAGGATCGCGTGCGCAGCGCCATTA
TCAATAGCCAGTTTGAATTTCCCTGTCGTAAAATCACGGTCAATCTGGCTCCAGCGGATTTACCCAAGTCCGGTAGTGGT
TTTGATTTACCCATTGCTATCGGCATTCTTACAGCTTCCGGACAAATTTCTCAACAAAAATTAGCCGACCATGAGTTCAT
TGGCGAATTGGCGCTCAATGGCCACCTGAGAGGCGTCACAGCCATCATTCCTATTGTTCTTGCTGCCTTTAAAGAGAAAC
AACAACTCATCATCGCTCATGATAATGAGGAAGAAGCTTCTCTTGCAGGACATCAAAACGTCTACACAGCACATCATCTA
AGAGAAGTCTGCAGTTATCTATGCCGGGATACAACCTTACAAACCCTGCCACCCAGACCTGAAGTTACTCGCGATGATCA
AAAACTCGACTGGTCAGAGGTTAAAGGTCAGCCTCACGCGAAACATGCCCTGGAAATAGCAGCCTGTGGAGGTCACAGCG
TTTTATTAAGCGGCGCGCCAGGCAGCGGTAAAACCATGCTGGCAAAACGATTTGCCACACTTCTGCCTGATCTTTCGGAA
AATGAAGCGCTGGAATGTGCGGCTATTCACTCTATTCGCGGCAAGTTGCCTAATTTTCAGCAATGGCGAATACCGCCTTT
TCGCTCACCGCATCACACAGCCTCACCTGTTGCTCTTGTCGGAGGTGGTAATCCACCTAAACCCGGCGAAATTTCTCTCG
CTCATTGTGGTGTTTTGTTTCTTGACGAATTACCGGAATTTAATCGCCATGTTCTGGAAACTTTAAGAGAACCTTTGGAA
TCTGGTCATATTTGTATTTCCAGAGCAGCCATACAAATGGAATTTCCAGCTCATTTTCAACTCATTGCCGCAATGAATCC
TTGTCCTTGCGGTCAGTGGGGAAATCCTCAGGCTGACTGCTTGTGCAGCCCCGATCGCATCAGTCGTTATCTTGGTAAAT
TATCCGCGCCTTTACTGGATCGTATTGATATGCAAATTCATGTTTATCCCTTGTCAAAAGAAGAACTCATCAAGCCTAAT
GAACAAAAGGAAAATCAAAGTGCTGTCCTTAGAGAAAAAGTGGCAAGCATAAGAAAAACACAATGGTTGCGTCAGGATTG
CCTGAATGCTCATTTAAGCGCTAAAGCTTGCGAACAACTTTGCTCACTTGGATCGCCTGAGCAGCAATTTCTAAGCAAGG
CCATGGACAAACTCAAATTGTCTGCTCGCAGTTATCATCGCTTACTCAAAGTTGCCCGAACCATAGCCGATATGAAACAA
CAAAACAGCGTGTCAGTTTCTCATCTGCAACAGGCCTTGTCATTTAAACAAGCCCTGCAAGCACCTAAATAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-395)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-496)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Legionella pneumophila str. Paris

74.553

100

0.746
  comM Legionella pneumophila strain ERS1305867

74.553

100

0.746
  comM Glaesserella parasuis strain SC1401

50.397

100

0.505
  comM Haemophilus influenzae Rd KW20

50.497

100

0.505
  comM Vibrio cholerae strain A1552

51.008

98.608

0.503
  comM Vibrio campbellii strain DS40M4

50

99.006

0.495
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.857

98.807

0.423

Multiple sequence alignment