Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FNT16_RS06630 Genome accession   NZ_CP041660
Coordinates   1632385..1632969 (+) Length   194 a.a.
NCBI ID   WP_143870826.1    Uniprot ID   -
Organism   Catenovulum sediminis strain WS1-A     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1627385..1637969
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNT16_RS06620 uvrA 1628003..1630831 (-) 2829 WP_143870822.1 excinuclease ABC subunit UvrA -
  FNT16_RS06625 - 1630999..1632375 (+) 1377 WP_143870824.1 MFS transporter -
  FNT16_RS06630 ssb 1632385..1632969 (+) 585 WP_143870826.1 single-stranded DNA-binding protein Machinery gene
  FNT16_RS06635 - 1633228..1635306 (+) 2079 WP_143870828.1 PAS domain S-box protein -
  FNT16_RS06640 - 1635310..1635978 (+) 669 WP_143870830.1 response regulator transcription factor -
  FNT16_RS06645 - 1635936..1636325 (-) 390 WP_143870831.1 hypothetical protein -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 21717.92 Da        Isoelectric Point: 4.9562

>NTDB_id=372831 FNT16_RS06630 WP_143870826.1 1632385..1632969(+) (ssb) [Catenovulum sediminis strain WS1-A]
MASRGINKVILVGNLGQDPEVRYMPNGNAVANLTLATSESWKDRNSGQMQEKTEWHRIVIFGKLAEIAGEYLRKGSQVYI
EGKLQTRKWQDQQGQDRYSTEIVVDINGSMQMLDRRSDNAGQGGGYQQPQAQQPQYNQNQPQQQAPQQSYQQPAAQPQYN
QAPPQQPAQNRPAPAPQAAPPAEPNLDFDDDIPF

Nucleotide


Download         Length: 585 bp        

>NTDB_id=372831 FNT16_RS06630 WP_143870826.1 1632385..1632969(+) (ssb) [Catenovulum sediminis strain WS1-A]
ATGGCGTCTCGCGGCATAAACAAAGTAATTTTAGTTGGTAATTTAGGACAAGATCCTGAAGTACGTTATATGCCTAATGG
CAATGCGGTAGCCAACCTAACCTTAGCAACTTCTGAAAGTTGGAAAGACAGAAACTCTGGCCAAATGCAGGAAAAAACTG
AATGGCACAGAATCGTTATTTTTGGCAAGTTGGCAGAAATAGCGGGTGAATATTTACGCAAAGGTTCACAAGTATATATT
GAAGGTAAATTGCAAACGCGTAAGTGGCAAGATCAACAAGGTCAAGACAGATATTCAACTGAAATTGTGGTGGATATTAA
CGGCAGCATGCAAATGTTGGATAGACGCTCTGATAATGCAGGACAGGGTGGTGGTTACCAGCAACCACAAGCGCAGCAAC
CACAATACAATCAAAATCAACCTCAGCAACAAGCGCCTCAGCAGAGCTATCAGCAACCTGCAGCACAGCCTCAATATAAT
CAGGCTCCACCGCAGCAACCCGCTCAAAATAGACCCGCGCCAGCGCCTCAAGCAGCACCGCCAGCTGAGCCAAATTTAGA
TTTTGATGATGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

59.113

100

0.619
  ssb Glaesserella parasuis strain SC1401

53.886

99.485

0.536
  ssb Neisseria gonorrhoeae MS11

49.735

97.423

0.485
  ssb Neisseria meningitidis MC58

48.677

97.423

0.474

Multiple sequence alignment