Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   FNC98_RS15810 Genome accession   NZ_CP041638
Coordinates   3561082..3562611 (+) Length   509 a.a.
NCBI ID   WP_144035236.1    Uniprot ID   A0A516HG13
Organism   Thalassotalea sp. PS06     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3556082..3567611
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNC98_RS15795 (FNC98_15795) - 3557561..3558487 (-) 927 WP_144035233.1 branched-chain amino acid transaminase -
  FNC98_RS15800 (FNC98_15800) ilvM 3558517..3558789 (-) 273 WP_144035234.1 acetolactate synthase 2 small subunit -
  FNC98_RS15805 (FNC98_15805) ilvG 3558880..3560586 (-) 1707 WP_144035235.1 acetolactate synthase 2 catalytic subunit -
  FNC98_RS15810 (FNC98_15810) comM 3561082..3562611 (+) 1530 WP_144035236.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  FNC98_RS15815 (FNC98_15815) ilvY 3563296..3564198 (-) 903 WP_144035237.1 HTH-type transcriptional activator IlvY -
  FNC98_RS15820 (FNC98_15820) ilvC 3564370..3565845 (+) 1476 WP_144035238.1 ketol-acid reductoisomerase -
  FNC98_RS15825 (FNC98_15825) cysK 3566030..3567508 (+) 1479 WP_144035239.1 cysteine synthase A -

Sequence

Protein


Download         Length: 509 a.a.        Molecular weight: 56245.60 Da        Isoelectric Point: 7.0579

>NTDB_id=372687 FNC98_RS15810 WP_144035236.1 3561082..3562611(+) (comM) [Thalassotalea sp. PS06]
MAIAKIFSRARIGLDAPTVIVEVHIANGLPAFNIVGLPETTVKESKDRVRSAIINCGYEFPGRRITVNLAPADLPKEGGR
FDLPIAIGILLASEQLPQFNTDTLEFAGELSLSGELRPILGEISMAMACAAQGRDLFLPQGNSAQASWVDDVTIYPLTHL
AQLFPHLQRIQPIEPLKSSKPQISGAQHAICLSDIIGQDSAKRGLEIAASGGHNLLLIGPPGTGKTMLASRLATLLPDME
QHEALQTAAIRSICGQEITCDNWLMRPFRAPHHNASSAALVGGGSHPQPGEITLAHNGVLFLDELVEFDRKVLEVLREPI
ESGEVTISRVKQKTTYPAKFQLIAAMNPSPTGFYNDKRATPEQVMRYLNRLSGPLLERIDMQLEVPLLPKGYWRKDGYQQ
QGESSETVRERVIECRQRQIRRQGKANHRLSAAELHQYCHLSEDNLEFFELAIEKLGLSTRVHHNLLKIARTIADMSGAE
QIDKLHLTEALSYRAMDRILSYLASNLQR

Nucleotide


Download         Length: 1530 bp        

>NTDB_id=372687 FNC98_RS15810 WP_144035236.1 3561082..3562611(+) (comM) [Thalassotalea sp. PS06]
ATGGCGATTGCAAAAATTTTCTCCCGGGCCAGAATCGGGTTAGATGCACCTACGGTTATTGTCGAAGTGCATATTGCCAA
CGGTCTTCCGGCGTTCAATATCGTTGGTTTACCAGAGACCACGGTTAAAGAATCGAAAGACCGGGTGCGCTCTGCCATTA
TTAACTGCGGCTATGAATTTCCGGGCCGCCGTATTACCGTCAACCTCGCGCCGGCAGATTTACCCAAAGAAGGTGGCCGC
TTTGATTTACCGATTGCTATTGGCATTTTATTAGCATCGGAGCAATTACCACAGTTTAATACTGACACTCTAGAATTTGC
CGGAGAGCTTTCTCTATCCGGTGAGCTAAGACCAATTCTTGGCGAGATATCCATGGCCATGGCATGTGCCGCGCAAGGAC
GGGATCTGTTTTTGCCCCAGGGTAATAGTGCTCAGGCATCCTGGGTGGATGATGTGACTATCTATCCGTTAACGCATCTG
GCGCAATTATTTCCGCACTTACAACGTATCCAGCCGATTGAACCACTAAAATCCAGCAAACCACAAATTAGCGGCGCCCA
ACATGCGATTTGCCTGAGCGATATTATTGGCCAGGACAGTGCCAAACGAGGCTTGGAAATTGCCGCTAGTGGTGGCCATA
ACCTACTACTGATAGGCCCGCCAGGAACCGGCAAAACCATGTTGGCCTCAAGACTTGCCACCTTGCTTCCGGATATGGAA
CAACATGAAGCTTTGCAAACCGCCGCCATACGCTCGATATGCGGACAGGAAATTACCTGTGATAACTGGCTAATGCGTCC
GTTTCGAGCGCCACATCATAATGCCTCTTCTGCGGCATTAGTCGGCGGTGGCAGTCATCCACAGCCTGGAGAAATTACCC
TTGCCCACAACGGTGTCTTATTTTTGGATGAGTTAGTTGAATTCGACAGAAAGGTTTTAGAAGTATTACGCGAACCGATA
GAGAGCGGCGAAGTCACCATATCCAGAGTTAAACAAAAGACCACGTATCCAGCAAAGTTCCAGTTAATCGCCGCGATGAA
CCCTTCGCCGACGGGATTTTATAATGACAAACGAGCGACACCAGAGCAGGTAATGCGTTACCTGAATCGTTTGTCAGGTC
CTTTACTTGAACGTATCGATATGCAATTGGAAGTGCCCTTATTGCCAAAAGGCTATTGGCGAAAGGACGGGTATCAGCAA
CAGGGTGAGAGCAGTGAAACGGTTCGAGAGCGGGTAATCGAATGCCGACAACGACAGATTCGTCGGCAGGGCAAAGCTAA
TCATCGCTTAAGTGCCGCAGAGTTACATCAATATTGCCATTTATCGGAAGACAATCTTGAATTCTTTGAGCTCGCCATCG
AAAAACTTGGTCTTTCTACCCGAGTTCATCACAACCTGTTAAAGATTGCCCGTACCATCGCCGATATGTCAGGCGCTGAG
CAAATCGATAAATTGCATCTCACCGAAGCCTTGTCCTATCGCGCCATGGATCGGATCCTCAGCTATCTGGCCAGTAATTT
ACAGCGTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(192-388)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A516HG13

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.819

99.607

0.556
  comM Glaesserella parasuis strain SC1401

54.492

100

0.548
  comM Vibrio campbellii strain DS40M4

54.635

99.607

0.544
  comM Haemophilus influenzae Rd KW20

53.425

100

0.536
  comM Legionella pneumophila str. Paris

47.59

97.839

0.466
  comM Legionella pneumophila strain ERS1305867

47.59

97.839

0.466
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.811

100

0.438

Multiple sequence alignment