Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FNC98_RS02150 Genome accession   NZ_CP041638
Coordinates   504666..505286 (+) Length   206 a.a.
NCBI ID   WP_143579716.1    Uniprot ID   A0A516H938
Organism   Thalassotalea sp. PS06     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 499666..510286
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNC98_RS02140 (FNC98_02140) - 500016..500633 (+) 618 WP_143579714.1 flavin prenyltransferase UbiX -
  FNC98_RS02145 (FNC98_02145) - 501117..504353 (+) 3237 WP_143579715.1 amidohydrolase family protein -
  FNC98_RS02150 (FNC98_02150) ssb 504666..505286 (+) 621 WP_143579716.1 single-stranded DNA-binding protein Machinery gene
  FNC98_RS02155 (FNC98_02155) - 505681..507765 (+) 2085 WP_143579717.1 TonB-dependent receptor -
  FNC98_RS02160 (FNC98_02160) - 508013..508225 (+) 213 WP_143579718.1 hypothetical protein -
  FNC98_RS02165 (FNC98_02165) cls 508222..509640 (+) 1419 WP_221932913.1 cardiolipin synthase -
  FNC98_RS02170 (FNC98_02170) - 509649..509963 (-) 315 WP_409574563.1 MerR family DNA-binding protein -
  FNC98_RS17045 - 509938..510066 (-) 129 WP_409574564.1 MerR family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 22713.78 Da        Isoelectric Point: 5.2628

>NTDB_id=372672 FNC98_RS02150 WP_143579716.1 504666..505286(+) (ssb) [Thalassotalea sp. PS06]
MASRGVNKVIIVGNLGQDPEVRFFPSGGAVCNVTIATSESWKDKQTGEQKEITEWHRVVFNNRLAEIAGEYLKKGSKVYV
EGRLQTRKWQNQQGQDQYTTEIRANEMQMLDSRGAGQGAGQGGGFNQSQAGGFNQQSAQQPAMQQGGYQQNQGGFNQQSS
QPAAQQPQQQGGFQQNQGGFQQNNQQQAPKVNPQEPVMDFDDDIPF

Nucleotide


Download         Length: 621 bp        

>NTDB_id=372672 FNC98_RS02150 WP_143579716.1 504666..505286(+) (ssb) [Thalassotalea sp. PS06]
ATGGCCAGTCGTGGTGTAAATAAAGTAATTATTGTAGGTAATTTAGGGCAAGACCCTGAAGTTCGTTTTTTCCCTAGCGG
TGGTGCGGTATGTAACGTAACGATCGCAACCTCAGAAAGCTGGAAAGACAAGCAAACCGGTGAGCAAAAAGAGATCACCG
AGTGGCATCGCGTCGTATTCAACAATCGCCTGGCGGAAATTGCTGGCGAGTACCTGAAAAAAGGTTCAAAAGTTTATGTT
GAAGGTCGCTTACAGACACGTAAATGGCAGAATCAGCAGGGACAGGATCAGTACACTACGGAAATCCGTGCTAACGAAAT
GCAAATGTTAGATTCTCGTGGTGCAGGCCAGGGCGCTGGCCAAGGTGGTGGTTTTAACCAAAGCCAGGCTGGTGGATTCA
ACCAGCAATCTGCTCAACAACCAGCAATGCAGCAGGGTGGTTATCAGCAAAACCAGGGTGGCTTTAATCAGCAATCTTCA
CAACCTGCGGCTCAGCAACCACAACAACAGGGTGGCTTCCAGCAAAACCAGGGCGGTTTCCAGCAAAATAACCAACAGCA
GGCTCCTAAGGTAAACCCACAAGAGCCGGTAATGGATTTTGACGACGATATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A516H938

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

54.502

100

0.558
  ssb Glaesserella parasuis strain SC1401

50

100

0.505
  ssb Neisseria gonorrhoeae MS11

43.069

98.058

0.422
  ssb Neisseria meningitidis MC58

41.546

100

0.417

Multiple sequence alignment