Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   FNL97_RS00095 Genome accession   NZ_CP041632
Coordinates   15327..15821 (+) Length   164 a.a.
NCBI ID   WP_062754533.1    Uniprot ID   A0A6G9J298
Organism   Geobacillus sp. E263     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 10327..20821
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNL97_RS00060 - 10966..11280 (+) 315 WP_143414743.1 DUF554 family protein -
  FNL97_RS00065 yyaC 11333..11956 (-) 624 WP_041269771.1 spore protease YyaC -
  FNL97_RS00070 - 12105..13004 (+) 900 WP_143414744.1 mechanosensitive ion channel family protein -
  FNL97_RS00075 - 13026..13223 (+) 198 WP_015865414.1 DUF951 domain-containing protein -
  FNL97_RS18170 - 13328..13456 (+) 129 WP_268796332.1 hypothetical protein -
  FNL97_RS18175 - 13520..13765 (+) 246 WP_286173423.1 hypothetical protein -
  FNL97_RS00085 ychF 13805..14905 (+) 1101 WP_062679397.1 redox-regulated ATPase YchF -
  FNL97_RS00090 rpsF 15010..15297 (+) 288 WP_015865412.1 30S ribosomal protein S6 -
  FNL97_RS00095 ssbA 15327..15821 (+) 495 WP_062754533.1 single-stranded DNA-binding protein Machinery gene
  FNL97_RS00100 rpsR 15876..16115 (+) 240 WP_003253854.1 30S ribosomal protein S18 -
  FNL97_RS00105 - 16210..17136 (+) 927 WP_143414745.1 YybS family protein -
  FNL97_RS00110 - 17184..19160 (+) 1977 WP_015865409.1 DHH family phosphoesterase -
  FNL97_RS00115 rplI 19157..19606 (+) 450 WP_143414746.1 50S ribosomal protein L9 -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18357.27 Da        Isoelectric Point: 4.6052

>NTDB_id=372600 FNL97_RS00095 WP_062754533.1 15327..15821(+) (ssbA) [Geobacillus sp. E263]
MINRVILVGRLTRDPELRYTPSGVAVATFTLAVNRPFTNQQGEREADFINCVVWRRQAENVANFLKKGSLAGVDGRLQTR
SYEGQDGRRVYVTEVVADSVQFLEPKSSAEQRGVAAGGYYGEPFPFGPDQNHRNPNEKDFSRIDEDPFANDGQTIDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=372600 FNL97_RS00095 WP_062754533.1 15327..15821(+) (ssbA) [Geobacillus sp. E263]
ATGATTAATCGCGTAATTCTTGTAGGAAGGTTAACGAGAGATCCGGAATTACGCTATACTCCAAGTGGGGTGGCTGTTGC
CACGTTTACGCTTGCTGTCAATCGTCCGTTTACAAACCAGCAAGGTGAACGTGAAGCGGATTTTATTAACTGCGTTGTTT
GGCGTCGTCAAGCCGAAAATGTCGCGAATTTCTTAAAAAAGGGAAGTTTAGCCGGAGTAGACGGTCGTTTACAAACCCGC
AGCTATGAAGGTCAAGATGGAAGACGTGTATATGTGACGGAAGTGGTTGCTGATAGCGTCCAATTTCTTGAGCCGAAAAG
TAGCGCAGAACAGCGTGGAGTGGCAGCAGGCGGCTACTATGGGGAGCCATTCCCATTTGGACCAGATCAGAACCATCGCA
ATCCAAACGAAAAAGATTTTAGTCGCATAGATGAAGATCCTTTTGCAAACGATGGTCAAACGATCGATATTTCGGATGAT
GACCTACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G9J298

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

66.667

100

0.707
  ssb Latilactobacillus sakei subsp. sakei 23K

60

100

0.622
  ssbB Bacillus subtilis subsp. subtilis str. 168

63.208

64.634

0.409
  ssb Glaesserella parasuis strain SC1401

33.702

100

0.372
  ssb Vibrio cholerae strain A1552

33.708

100

0.366

Multiple sequence alignment