Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FNA65_RS13630 Genome accession   NZ_CP041513
Coordinates   2497466..2497981 (+) Length   171 a.a.
NCBI ID   WP_000168307.1    Uniprot ID   -
Organism   Shigella boydii strain KCCM 41690     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2492466..2502981
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNA65_RS13610 aphA 2492755..2493468 (+) 714 WP_001317548.1 acid phosphatase AphA -
  FNA65_RS13615 - 2493579..2493995 (+) 417 WP_000270377.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  FNA65_RS13620 - 2493999..2494355 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  FNA65_RS13625 uvrA 2494390..2497212 (-) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  FNA65_RS13630 ssb 2497466..2497981 (+) 516 WP_000168307.1 single-stranded DNA-binding protein SSB1 Machinery gene
  FNA65_RS13635 - 2498080..2498361 (-) 282 WP_001295689.1 YjcB family protein -
  FNA65_RS13640 pdeC 2498791..2499525 (+) 735 Protein_2487 c-di-GMP phosphodiesterase PdeC -
  FNA65_RS13645 - 2499582..2500280 (+) 699 Protein_2488 IS1 family transposase -
  FNA65_RS13650 pdeC 2500289..2501155 (+) 867 Protein_2489 c-di-GMP phosphodiesterase PdeC -
  FNA65_RS13655 soxS 2501158..2501481 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  FNA65_RS13660 soxR 2501567..2502031 (+) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18264.25 Da        Isoelectric Point: 5.2358

>NTDB_id=372206 FNA65_RS13630 WP_000168307.1 2497466..2497981(+) (ssb) [Shigella boydii strain KCCM 41690]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQQPQGGNQFSGGAQSRPQQSAPAAPSNE
PPMDFDDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=372206 FNA65_RS13630 WP_000168307.1 2497466..2497981(+) (ssb) [Shigella boydii strain KCCM 41690]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGTAATATCGGTGGTGGTCAGCCTCAGC
AGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCTCCGGCAGCGCCGTCTAACGAG
CCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

73.481

100

0.778
  ssb Glaesserella parasuis strain SC1401

58.242

100

0.62
  ssb Neisseria meningitidis MC58

48.588

100

0.503
  ssb Neisseria gonorrhoeae MS11

48.588

100

0.503
  ssbA Bacillus subtilis subsp. subtilis str. 168

35.556

100

0.374

Multiple sequence alignment