Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   FMO13_RS11560 Genome accession   NZ_CP041382
Coordinates   2745087..2746607 (-) Length   506 a.a.
NCBI ID   WP_057679039.1    Uniprot ID   -
Organism   Xanthomonas phaseoli pv. dieffenbachiae strain PL36     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2740087..2751607
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FMO13_RS11540 (FMO13_11980) - 2740707..2741828 (+) 1122 WP_017158196.1 fatty acid desaturase family protein -
  FMO13_RS11545 (FMO13_11985) - 2741893..2743455 (-) 1563 WP_209226136.1 EAL domain-containing protein -
  FMO13_RS11550 (FMO13_11990) - 2743834..2744010 (+) 177 WP_017158194.1 hypothetical protein -
  FMO13_RS11555 (FMO13_11995) - 2744226..2744735 (-) 510 WP_057679040.1 lipocalin family protein -
  FMO13_RS11560 (FMO13_12000) comM 2745087..2746607 (-) 1521 WP_057679039.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  FMO13_RS11565 (FMO13_12005) ubiK 2746623..2746901 (-) 279 WP_017156738.1 ubiquinone biosynthesis accessory factor UbiK -
  FMO13_RS11570 (FMO13_12010) - 2747055..2747429 (+) 375 WP_008574841.1 P-II family nitrogen regulator -
  FMO13_RS11575 (FMO13_12020) - 2747911..2749896 (+) 1986 WP_209226139.1 beta-N-acetylglucosaminidase domain-containing protein -
  FMO13_RS11580 (FMO13_12025) - 2750103..2750759 (-) 657 WP_057679037.1 RIO1 family regulatory kinase/ATPase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 53932.61 Da        Isoelectric Point: 8.3425

>NTDB_id=371769 FMO13_RS11560 WP_057679039.1 2745087..2746607(-) (comM) [Xanthomonas phaseoli pv. dieffenbachiae strain PL36]
MSLALVHSRARVGVHAPEVRVEVHLSGGLPSTQIVGLPEAAVRESRERVRAALLCAQFEFPARRITINLAPADLPKEGGR
FDLPIALGILAASGQIDRQALADYEFLGELALTGELRGVDGVLPAALAAAQAGRRLIVPLANGAEAAIAGHVEAFTARTL
LDVCATLNGSQKAPAAELAAQALGARALPDMADVRGQPHARRALEIAAAGGHHLLLVGSPGCGKTLLASRLPGLLPEASE
AEALETAAITSISGRGLDLARWRQRPYRAPHHTASPVALVGGGTHPRPGEISLSHNGVLFLDELPEWQRQTLEVLREPLE
SGVVTIARASRSVDFPARFQLVAAMNPCPCGWAGDGSGRCRCSSDSIRRYRSRISGPLLDRIDLHVEVPRLPPQALRSGN
LGEDSASVRTRVVAARQRQLARGALPNAQLDQADTDRHCRLQHDDQVLLERAIEHLQLSARSMHRILRVARTIADLDDSP
DIATRHLTEAIGYRKLDRALGAASAA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=371769 FMO13_RS11560 WP_057679039.1 2745087..2746607(-) (comM) [Xanthomonas phaseoli pv. dieffenbachiae strain PL36]
ATGAGTCTGGCGCTGGTGCACAGCCGTGCCCGCGTGGGGGTGCATGCGCCTGAAGTTCGGGTGGAAGTGCATCTCTCCGG
CGGTCTTCCTTCTACCCAGATCGTGGGCCTACCCGAAGCGGCAGTGCGCGAATCGCGCGAGCGCGTGCGTGCCGCCCTGC
TGTGCGCACAGTTCGAATTCCCCGCCCGGCGCATCACCATCAACCTGGCACCGGCCGATCTACCGAAAGAAGGCGGCCGG
TTCGACCTGCCGATCGCTCTCGGCATCCTGGCTGCCAGCGGGCAGATCGACCGTCAGGCCCTGGCCGATTACGAATTCCT
CGGCGAGCTTGCGCTGACCGGCGAGCTGCGCGGCGTCGACGGCGTGCTGCCCGCGGCGCTGGCGGCCGCGCAGGCCGGGC
GACGGCTGATCGTCCCGCTCGCCAACGGTGCCGAAGCCGCCATCGCCGGGCACGTCGAAGCCTTCACCGCGCGCACCCTG
CTGGATGTCTGCGCCACGCTCAACGGCAGCCAGAAAGCGCCTGCCGCCGAGCTGGCAGCGCAGGCGCTCGGCGCCCGCGC
CCTGCCCGACATGGCCGACGTGCGCGGCCAACCGCATGCACGTCGCGCGCTGGAGATCGCCGCCGCCGGTGGGCACCATC
TGTTGCTGGTCGGCAGCCCTGGCTGCGGCAAGACCCTGCTGGCCTCGCGCCTGCCTGGTCTATTGCCCGAGGCCAGCGAA
GCAGAGGCACTGGAAACCGCAGCGATCACCTCGATCAGCGGCCGTGGGCTGGATCTGGCCCGCTGGCGGCAACGCCCCTA
CCGCGCCCCGCACCACACCGCCAGCCCGGTGGCCCTGGTCGGCGGCGGCACGCACCCGCGCCCCGGCGAGATCTCGCTGT
CTCACAACGGCGTGCTGTTCCTGGACGAATTGCCCGAGTGGCAACGGCAAACCTTGGAAGTGTTGCGCGAGCCACTGGAG
TCGGGCGTGGTCACGATCGCGCGCGCGTCACGCAGCGTGGATTTTCCGGCGCGCTTCCAACTAGTCGCCGCCATGAATCC
CTGCCCGTGCGGCTGGGCAGGCGATGGCAGCGGGCGCTGCCGCTGCAGCAGCGATAGCATCCGTCGCTACCGCAGCCGCA
TCTCCGGCCCGTTGCTGGACCGCATCGATCTGCATGTGGAAGTGCCGCGCCTTCCGCCACAGGCGCTGCGCAGCGGCAAC
CTCGGTGAAGACAGCGCCAGCGTGCGGACGCGCGTGGTCGCCGCACGACAACGACAGCTTGCACGCGGCGCGCTGCCCAA
TGCGCAACTGGACCAGGCCGATACCGACCGCCATTGCCGCCTGCAACACGACGATCAGGTGCTGCTGGAGCGCGCCATCG
AACACCTGCAGCTGTCCGCACGCTCGATGCATCGCATCCTGCGCGTTGCGCGCACCATTGCCGATCTCGACGACAGCCCG
GACATCGCCACACGCCATCTCACCGAAGCGATCGGCTACCGCAAACTGGATCGCGCGCTTGGCGCCGCCAGCGCGGCGTA
G

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.126

100

0.561
  comM Haemophilus influenzae Rd KW20

54.99

100

0.555
  comM Vibrio campbellii strain DS40M4

54.102

100

0.547
  comM Glaesserella parasuis strain SC1401

53.846

100

0.54
  comM Legionella pneumophila str. Paris

51.509

98.221

0.506
  comM Legionella pneumophila strain ERS1305867

51.509

98.221

0.506
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.257

100

0.453

Multiple sequence alignment