Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   FMO13_RS05315 Genome accession   NZ_CP041382
Coordinates   1273127..1274581 (+) Length   484 a.a.
NCBI ID   WP_017155148.1    Uniprot ID   -
Organism   Xanthomonas phaseoli pv. dieffenbachiae strain PL36     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1268127..1279581
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FMO13_RS05295 (FMO13_05490) - 1268427..1268711 (-) 285 Protein_1043 hypothetical protein -
  FMO13_RS05300 (FMO13_05495) sucD 1268951..1269826 (-) 876 WP_005921370.1 succinate--CoA ligase subunit alpha -
  FMO13_RS05305 (FMO13_05500) sucC 1269851..1271020 (-) 1170 WP_209225618.1 ADP-forming succinate--CoA ligase subunit beta -
  FMO13_RS05310 (FMO13_05505) - 1271252..1272865 (+) 1614 WP_209225620.1 sensor histidine kinase -
  FMO13_RS05315 (FMO13_05510) pilR 1273127..1274581 (+) 1455 WP_017155148.1 sigma-54-dependent transcriptional regulator Regulator
  FMO13_RS05320 (FMO13_05515) - 1274785..1274946 (-) 162 Protein_1048 serine/threonine protein kinase -
  FMO13_RS05325 (FMO13_05520) - 1274993..1275112 (-) 120 WP_057687106.1 hypothetical protein -
  FMO13_RS05330 (FMO13_05525) pilB 1275174..1276883 (-) 1710 WP_057677884.1 type IV-A pilus assembly ATPase PilB Machinery gene
  FMO13_RS05335 (FMO13_05530) pilA 1277041..1277469 (-) 429 WP_057677883.1 pilin Machinery gene
  FMO13_RS05340 (FMO13_05535) pilC 1277810..1279072 (+) 1263 WP_057677885.1 type II secretion system F family protein Machinery gene

Sequence

Protein


Download         Length: 484 a.a.        Molecular weight: 52321.00 Da        Isoelectric Point: 6.6960

>NTDB_id=371762 FMO13_RS05315 WP_017155148.1 1273127..1274581(+) (pilR) [Xanthomonas phaseoli pv. dieffenbachiae strain PL36]
MGGDPLDNCRPSSRWAIVRPMNEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPD
GNGIELVTEIAKHYPQTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNRDRPAPPPPPPEQASR
LLGDSSAMESLRATIGKVARSQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTG
AHADKPGLFQAAHGGTLFLDEVAELPLQMQVKLLRAIQEKSVRPVGASSESLVDVRILSATHKDLGDLVSDGRFRHDLYY
RINVIELRVPPLRERGGDLPQLAAAIIARLAHSHGRPIPLLTQSALDALNHYGFPGNVRELENILERALALAEDDQISAT
DLRLPAHGGHRLAAPSGGAAAEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKK
LGME

Nucleotide


Download         Length: 1455 bp        

>NTDB_id=371762 FMO13_RS05315 WP_017155148.1 1273127..1274581(+) (pilR) [Xanthomonas phaseoli pv. dieffenbachiae strain PL36]
TTGGGCGGCGACCCGCTCGACAATTGTCGACCGTCATCACGCTGGGCTATCGTGCGTCCCATGAACGAACCCAAAAGCGC
CCTGGTTGTCGATGACGAGCGTGATATCCGCGAGTTGCTTGTTCTCACCCTGGGCCGCATGGGCCTGCGCATCAGCACCG
CTGCCAACCTGGCCGAGGCGCGCGAGTTGCTGGCCAACAATCCCTACGATTTGTGCCTGACCGACATGCGGTTGCCAGAC
GGCAACGGCATCGAACTGGTCACCGAAATCGCAAAACACTATCCGCAGACGCCGGTGGCGATGATCACCGCCTTCGGCAG
CATGGACCTGGCCGTGGAAGCGCTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAGCCGGTCGACATCGGCGTGCTGCGCG
GCCTGGTCAAGCACGCGCTGGAATTGAACAACCGCGACCGCCCCGCTCCGCCACCGCCACCACCGGAACAGGCCAGCCGC
CTGCTTGGCGACTCCAGCGCCATGGAAAGCCTGCGCGCCACCATCGGCAAGGTGGCGCGCAGCCAGGCGCCGGTCTACAT
CGTCGGCGAATCGGGCGTGGGCAAGGAGCTGGTCGCACGTACCATCCACGAACAAGGCGCACGCGCCGCCGGCCCGTTCG
TGCCGGTCAACTGCGGCGCCATTCCCGCCGAGCTGATGGAAAGCGAATTCTTCGGCCACAAGAAAGGCAGCTTCACCGGC
GCGCATGCCGACAAGCCCGGGCTGTTCCAGGCCGCGCACGGCGGCACCTTGTTCCTGGACGAAGTGGCCGAATTGCCGTT
GCAAATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAGTCGGTGCGACCGGTCGGCGCATCCAGCGAATCGCTGGTGG
ATGTGCGCATCCTCTCGGCCACCCACAAGGATCTGGGCGACCTGGTCTCCGACGGCCGCTTTCGGCATGACCTGTACTAC
CGCATCAACGTGATCGAGTTGCGTGTGCCGCCGCTGCGCGAACGCGGTGGCGACCTGCCGCAGCTGGCCGCGGCCATCAT
CGCGCGGCTGGCACACAGCCACGGCCGCCCCATTCCGCTGCTGACCCAATCTGCGCTCGACGCATTGAATCACTACGGCT
TCCCCGGAAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAGACGACCAGATCAGCGCCACC
GACCTGCGCCTGCCCGCCCACGGCGGCCACCGTCTGGCCGCCCCCTCAGGAGGTGCCGCGGCCGAACCGCGCGAAGCCGT
CGTCGACATCGACCCCGCCTCAGCCGCGCTGCCGTCCTACATCGAACAACTGGAACGCGCCGCGATCCAGAAGGCGCTGG
AAGAAAACCGCTGGAACAAGACCAAGACTGCCGCGCAGCTGGGCATTACGTTTCGGGCGCTGCGCTACAAATTGAAGAAG
CTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(28-134)

Sigma-54 interaction domain (Sigma54_activat)

(162-327)

Bacterial regulatory protein, Fis family (HTH_8)

(441-481)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.283

95.661

0.605
  pilR Acinetobacter baumannii strain A118

49.138

95.868

0.471

Multiple sequence alignment