Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | FMO13_RS05340 | Genome accession | NZ_CP041382 |
| Coordinates | 1277810..1279072 (+) | Length | 420 a.a. |
| NCBI ID | WP_057677885.1 | Uniprot ID | A0A1V9HE74 |
| Organism | Xanthomonas phaseoli pv. dieffenbachiae strain PL36 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1272810..1284072
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FMO13_RS05315 (FMO13_05510) | pilR | 1273127..1274581 (+) | 1455 | WP_017155148.1 | sigma-54-dependent transcriptional regulator | Regulator |
| FMO13_RS05320 (FMO13_05515) | - | 1274785..1274946 (-) | 162 | Protein_1048 | serine/threonine protein kinase | - |
| FMO13_RS05325 (FMO13_05520) | - | 1274993..1275112 (-) | 120 | WP_057687106.1 | hypothetical protein | - |
| FMO13_RS05330 (FMO13_05525) | pilB | 1275174..1276883 (-) | 1710 | WP_057677884.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| FMO13_RS05335 (FMO13_05530) | pilA | 1277041..1277469 (-) | 429 | WP_057677883.1 | pilin | Machinery gene |
| FMO13_RS05340 (FMO13_05535) | pilC | 1277810..1279072 (+) | 1263 | WP_057677885.1 | type II secretion system F family protein | Machinery gene |
| FMO13_RS05345 (FMO13_05540) | - | 1279079..1279942 (+) | 864 | WP_003491180.1 | prepilin peptidase | - |
| FMO13_RS05350 (FMO13_05545) | coaE | 1279956..1280564 (+) | 609 | WP_022558665.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 420 a.a. Molecular weight: 46240.74 Da Isoelectric Point: 10.2689
>NTDB_id=371765 FMO13_RS05340 WP_057677885.1 1277810..1279072(+) (pilC) [Xanthomonas phaseoli pv. dieffenbachiae strain PL36]
MSVARNAIKKQTADRSTVQQLQLFLWEGTDKRGIKMKGEQTARNMNMLRAELRRQGINPSIVKLKPKPLFGAAGKKITPK
DIAFFSRQMATMMKSGVPIVGSLEIIGEGHKNPRMKKMVGQVRTDIEGGSSLYESISRHPVQFDELYRNLVRAGEGAGVL
ETVLDTVATYKENIEALKGKIKKALFYPAMVIAVALIVSAILLIFVVPQFEEVFKGFGAELPAFTQMIVGASRFMVSYWW
IMFFVIAGAIVGFVFAYKRSPSMQHTMDRLILRVPVIGQIMHNSSIARFARTTAVTFKAGVPLVEALGIVAGATGNRVYE
DAVLRMRDDVSVGYPVNMAMKQVNLFPHMVIQMTAIGEEAGALDSMLFKVAEYFEQEVNNAVDALSSLLEPMIMVFIGVV
VGGMVIGMYLPIFKLGAVVG
MSVARNAIKKQTADRSTVQQLQLFLWEGTDKRGIKMKGEQTARNMNMLRAELRRQGINPSIVKLKPKPLFGAAGKKITPK
DIAFFSRQMATMMKSGVPIVGSLEIIGEGHKNPRMKKMVGQVRTDIEGGSSLYESISRHPVQFDELYRNLVRAGEGAGVL
ETVLDTVATYKENIEALKGKIKKALFYPAMVIAVALIVSAILLIFVVPQFEEVFKGFGAELPAFTQMIVGASRFMVSYWW
IMFFVIAGAIVGFVFAYKRSPSMQHTMDRLILRVPVIGQIMHNSSIARFARTTAVTFKAGVPLVEALGIVAGATGNRVYE
DAVLRMRDDVSVGYPVNMAMKQVNLFPHMVIQMTAIGEEAGALDSMLFKVAEYFEQEVNNAVDALSSLLEPMIMVFIGVV
VGGMVIGMYLPIFKLGAVVG
Nucleotide
Download Length: 1263 bp
>NTDB_id=371765 FMO13_RS05340 WP_057677885.1 1277810..1279072(+) (pilC) [Xanthomonas phaseoli pv. dieffenbachiae strain PL36]
ATGTCTGTCGCACGCAACGCCATCAAGAAGCAAACTGCGGATCGTAGCACCGTTCAACAGCTACAGCTGTTCCTTTGGGA
AGGAACTGACAAACGCGGGATCAAGATGAAAGGCGAACAGACTGCTCGCAACATGAACATGTTGCGGGCGGAGCTTCGCC
GCCAGGGTATCAATCCATCGATAGTCAAGCTTAAGCCTAAGCCGTTGTTCGGTGCTGCAGGCAAGAAAATCACGCCAAAA
GACATCGCTTTTTTCAGCCGCCAGATGGCGACCATGATGAAATCGGGGGTGCCGATTGTAGGCTCGCTCGAGATCATCGG
TGAGGGTCACAAAAACCCGCGGATGAAAAAGATGGTGGGTCAAGTGAGAACGGATATTGAGGGAGGCTCCTCCCTTTACG
AATCAATCAGCAGACATCCGGTTCAGTTTGACGAGCTCTACCGAAACCTTGTAAGAGCAGGTGAGGGTGCAGGCGTCCTG
GAGACAGTGCTAGATACGGTTGCCACTTACAAAGAAAATATAGAAGCACTAAAGGGCAAGATCAAAAAGGCCCTATTTTA
TCCAGCCATGGTTATTGCAGTCGCCCTGATTGTCAGCGCCATCCTCCTCATCTTTGTCGTCCCTCAATTTGAGGAGGTTT
TTAAAGGTTTTGGTGCCGAGCTACCTGCTTTTACTCAAATGATTGTGGGAGCCTCACGCTTCATGGTGAGCTATTGGTGG
ATTATGTTCTTCGTCATAGCAGGCGCCATCGTCGGATTTGTCTTTGCTTATAAGCGTTCGCCAAGCATGCAGCACACTAT
GGACAGGCTGATATTGAGAGTACCTGTCATAGGTCAAATCATGCATAACAGTTCGATTGCGCGTTTCGCGCGCACCACCG
CTGTTACCTTCAAAGCCGGCGTCCCACTGGTAGAGGCATTAGGCATTGTTGCGGGCGCCACTGGGAACCGCGTTTACGAA
GATGCTGTACTCCGCATGCGTGACGACGTATCCGTGGGATACCCTGTCAACATGGCGATGAAACAGGTAAACCTTTTTCC
ACACATGGTCATTCAAATGACCGCGATTGGCGAAGAAGCGGGCGCGCTAGACTCGATGCTTTTCAAGGTAGCGGAATACT
TCGAGCAGGAGGTTAATAATGCCGTGGATGCACTCAGCAGCCTGCTCGAACCAATGATTATGGTCTTCATTGGCGTTGTC
GTGGGCGGCATGGTCATCGGCATGTATCTTCCGATCTTCAAACTCGGCGCAGTGGTTGGATAA
ATGTCTGTCGCACGCAACGCCATCAAGAAGCAAACTGCGGATCGTAGCACCGTTCAACAGCTACAGCTGTTCCTTTGGGA
AGGAACTGACAAACGCGGGATCAAGATGAAAGGCGAACAGACTGCTCGCAACATGAACATGTTGCGGGCGGAGCTTCGCC
GCCAGGGTATCAATCCATCGATAGTCAAGCTTAAGCCTAAGCCGTTGTTCGGTGCTGCAGGCAAGAAAATCACGCCAAAA
GACATCGCTTTTTTCAGCCGCCAGATGGCGACCATGATGAAATCGGGGGTGCCGATTGTAGGCTCGCTCGAGATCATCGG
TGAGGGTCACAAAAACCCGCGGATGAAAAAGATGGTGGGTCAAGTGAGAACGGATATTGAGGGAGGCTCCTCCCTTTACG
AATCAATCAGCAGACATCCGGTTCAGTTTGACGAGCTCTACCGAAACCTTGTAAGAGCAGGTGAGGGTGCAGGCGTCCTG
GAGACAGTGCTAGATACGGTTGCCACTTACAAAGAAAATATAGAAGCACTAAAGGGCAAGATCAAAAAGGCCCTATTTTA
TCCAGCCATGGTTATTGCAGTCGCCCTGATTGTCAGCGCCATCCTCCTCATCTTTGTCGTCCCTCAATTTGAGGAGGTTT
TTAAAGGTTTTGGTGCCGAGCTACCTGCTTTTACTCAAATGATTGTGGGAGCCTCACGCTTCATGGTGAGCTATTGGTGG
ATTATGTTCTTCGTCATAGCAGGCGCCATCGTCGGATTTGTCTTTGCTTATAAGCGTTCGCCAAGCATGCAGCACACTAT
GGACAGGCTGATATTGAGAGTACCTGTCATAGGTCAAATCATGCATAACAGTTCGATTGCGCGTTTCGCGCGCACCACCG
CTGTTACCTTCAAAGCCGGCGTCCCACTGGTAGAGGCATTAGGCATTGTTGCGGGCGCCACTGGGAACCGCGTTTACGAA
GATGCTGTACTCCGCATGCGTGACGACGTATCCGTGGGATACCCTGTCAACATGGCGATGAAACAGGTAAACCTTTTTCC
ACACATGGTCATTCAAATGACCGCGATTGGCGAAGAAGCGGGCGCGCTAGACTCGATGCTTTTCAAGGTAGCGGAATACT
TCGAGCAGGAGGTTAATAATGCCGTGGATGCACTCAGCAGCCTGCTCGAACCAATGATTATGGTCTTCATTGGCGTTGTC
GTGGGCGGCATGGTCATCGGCATGTATCTTCCGATCTTCAAACTCGGCGCAGTGGTTGGATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Pseudomonas stutzeri DSM 10701 |
54.408 |
94.524 |
0.514 |
| pilC | Legionella pneumophila strain ERS1305867 |
53.383 |
95 |
0.507 |
| pilC | Acinetobacter baylyi ADP1 |
51.741 |
95.714 |
0.495 |
| pilC | Acinetobacter baumannii D1279779 |
50.249 |
95.714 |
0.481 |
| pilG | Neisseria gonorrhoeae MS11 |
44.612 |
95 |
0.424 |
| pilG | Neisseria meningitidis 44/76-A |
44.11 |
95 |
0.419 |
| pilC | Vibrio cholerae strain A1552 |
41.5 |
95.238 |
0.395 |
| pilC | Vibrio campbellii strain DS40M4 |
39.409 |
96.667 |
0.381 |