Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | DXK01_RS19895 | Genome accession | NZ_CP041379 |
| Coordinates | 5159428..5159886 (-) | Length | 152 a.a. |
| NCBI ID | WP_007664042.1 | Uniprot ID | A0A414ZFV2 |
| Organism | Bacteroides intestinalis strain APC919/174 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 5154428..5164886
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DXK01_RS19870 (DXK01_019870) | - | 5154705..5154935 (+) | 231 | WP_007214486.1 | (4Fe-4S)-binding protein | - |
| DXK01_RS19875 (DXK01_019875) | - | 5155005..5156378 (-) | 1374 | WP_007664030.1 | tryptophanase | - |
| DXK01_RS19880 (DXK01_019880) | - | 5156500..5157393 (-) | 894 | WP_007664033.1 | M23 family metallopeptidase | - |
| DXK01_RS19885 (DXK01_019885) | - | 5157412..5158044 (-) | 633 | WP_115501665.1 | 4'-phosphopantetheinyl transferase family protein | - |
| DXK01_RS19890 (DXK01_019890) | - | 5158058..5159404 (-) | 1347 | WP_115501664.1 | gliding motility-associated protein GldE | - |
| DXK01_RS19895 (DXK01_019895) | ssb | 5159428..5159886 (-) | 459 | WP_007664042.1 | single-stranded DNA-binding protein | Machinery gene |
| DXK01_RS19900 (DXK01_019900) | mutY | 5159965..5161005 (-) | 1041 | WP_115501663.1 | A/G-specific adenine glycosylase | - |
| DXK01_RS19905 (DXK01_019905) | - | 5161278..5161553 (+) | 276 | WP_007214495.1 | HU family DNA-binding protein | - |
| DXK01_RS19910 (DXK01_019910) | - | 5161827..5163401 (+) | 1575 | WP_007214496.1 | ribonuclease E/G | - |
| DXK01_RS19915 (DXK01_019915) | - | 5163522..5164703 (-) | 1182 | WP_115501662.1 | iron-containing alcohol dehydrogenase | - |
Sequence
Protein
Download Length: 152 a.a. Molecular weight: 16520.58 Da Isoelectric Point: 5.1961
>NTDB_id=371738 DXK01_RS19895 WP_007664042.1 5159428..5159886(-) (ssb) [Bacteroides intestinalis strain APC919/174]
MSVNKVILIGNVGRDPEVRYLDSGIAVASLPLATTDRAYTLANGTQVPERTEWHNLVLWRGLAETAEKYVHKGDKLYVEG
KIRTRSYDDQTGAKRYVTEIFVDSMEMLSPRGTVAPGAAAPQPGMSQGAPAQPMAQSQATPAQDNTTDDLPF
MSVNKVILIGNVGRDPEVRYLDSGIAVASLPLATTDRAYTLANGTQVPERTEWHNLVLWRGLAETAEKYVHKGDKLYVEG
KIRTRSYDDQTGAKRYVTEIFVDSMEMLSPRGTVAPGAAAPQPGMSQGAPAQPMAQSQATPAQDNTTDDLPF
Nucleotide
Download Length: 459 bp
>NTDB_id=371738 DXK01_RS19895 WP_007664042.1 5159428..5159886(-) (ssb) [Bacteroides intestinalis strain APC919/174]
ATGTCAGTAAATAAAGTAATATTGATTGGAAATGTAGGTAGAGACCCTGAAGTAAGATACCTGGATTCCGGTATCGCTGT
GGCTTCTTTGCCTTTGGCTACTACAGACCGTGCATACACATTGGCTAACGGTACGCAGGTACCCGAACGGACGGAATGGC
ACAATCTGGTACTTTGGCGCGGACTGGCAGAAACAGCCGAAAAATATGTGCATAAAGGGGATAAACTTTATGTGGAAGGC
AAAATCCGTACCCGTTCATACGATGACCAGACTGGTGCAAAGCGCTATGTTACAGAAATCTTTGTGGACTCTATGGAGAT
GCTGAGCCCCAGAGGAACTGTTGCACCGGGTGCTGCCGCTCCGCAACCGGGGATGTCACAAGGTGCTCCCGCACAACCCA
TGGCACAATCGCAGGCAACCCCTGCACAAGATAATACAACGGACGATTTACCGTTCTAA
ATGTCAGTAAATAAAGTAATATTGATTGGAAATGTAGGTAGAGACCCTGAAGTAAGATACCTGGATTCCGGTATCGCTGT
GGCTTCTTTGCCTTTGGCTACTACAGACCGTGCATACACATTGGCTAACGGTACGCAGGTACCCGAACGGACGGAATGGC
ACAATCTGGTACTTTGGCGCGGACTGGCAGAAACAGCCGAAAAATATGTGCATAAAGGGGATAAACTTTATGTGGAAGGC
AAAATCCGTACCCGTTCATACGATGACCAGACTGGTGCAAAGCGCTATGTTACAGAAATCTTTGTGGACTCTATGGAGAT
GCTGAGCCCCAGAGGAACTGTTGCACCGGGTGCTGCCGCTCCGCAACCGGGGATGTCACAAGGTGCTCCCGCACAACCCA
TGGCACAATCGCAGGCAACCCCTGCACAAGATAATACAACGGACGATTTACCGTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
41.714 |
100 |
0.48 |
| ssb | Neisseria meningitidis MC58 |
39.548 |
100 |
0.461 |
| ssb | Neisseria gonorrhoeae MS11 |
39.548 |
100 |
0.461 |
| ssb | Glaesserella parasuis strain SC1401 |
38.764 |
100 |
0.454 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
35.443 |
100 |
0.368 |