Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FEO47_RS20430 Genome accession   NZ_CP041362
Coordinates   4287694..4288221 (-) Length   175 a.a.
NCBI ID   WP_042999045.1    Uniprot ID   -
Organism   Citrobacter amalonaticus strain 133355-SW-C4-Cam     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4282694..4293221
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FEO47_RS20420 (FEO47_20420) - 4284343..4284774 (-) 432 WP_042999046.1 universal stress protein -
  FEO47_RS20425 (FEO47_20425) - 4285021..4287327 (-) 2307 WP_044264115.1 autotransporter outer membrane beta-barrel domain-containing protein -
  FEO47_RS20430 (FEO47_20430) ssb 4287694..4288221 (-) 528 WP_042999045.1 single-stranded DNA-binding protein SSB1 Machinery gene
  FEO47_RS20435 (FEO47_20435) uvrA 4288474..4291296 (+) 2823 WP_042999044.1 excinuclease ABC subunit UvrA -
  FEO47_RS20440 (FEO47_20440) - 4291338..4291694 (-) 357 WP_042999043.1 MmcQ/YjbR family DNA-binding protein -
  FEO47_RS20445 (FEO47_20445) aphA 4291821..4292534 (-) 714 WP_042999042.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 18877.92 Da        Isoelectric Point: 5.2456

>NTDB_id=371636 FEO47_RS20430 WP_042999045.1 4287694..4288221(-) (ssb) [Citrobacter amalonaticus strain 133355-SW-C4-Cam]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGQQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAPAA
PSNEPPMDFDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=371636 FEO47_RS20430 WP_042999045.1 4287694..4288221(-) (ssb) [Citrobacter amalonaticus strain 133355-SW-C4-Cam]
ATGGCCAGCAGAGGCGTAAATAAGGTTATTCTCGTGGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAATGG
TGGCGCAGTTGCCAACATCACGCTGGCTACTTCCGAATCCTGGCGTGACAAGCAGACCGGTGAAATGAAAGAGCAGACAG
AATGGCACCGTGTTGTGCTGTTCGGCAAACTGGCGGAAGTAGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTCTACATT
GAAGGTCAGTTGCGTACCCGTAAATGGACCGATCAGTCCGGCGTAGAGAAATACACCACGGAAGTGGTGGTGAATGTTGG
TGGTACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCACCGGCAGGCGGTCAGCAGCAACAGGGTGGTTGGGGTC
AACCTCAGCAGCCACAGGGTGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGCAGTCTGCCCCGGCAGCA
CCGTCTAATGAACCACCAATGGATTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

73.481

100

0.76
  ssb Glaesserella parasuis strain SC1401

57.065

100

0.6
  ssb Neisseria meningitidis MC58

46.995

100

0.491
  ssb Neisseria gonorrhoeae MS11

47.778

100

0.491
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.667

100

0.377

Multiple sequence alignment