Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   FLP15_RS11585 Genome accession   NZ_CP041356
Coordinates   2443258..2444250 (-) Length   330 a.a.
NCBI ID   WP_142767239.1    Uniprot ID   A0A514ZAS5
Organism   Lactococcus protaetiae strain KACC 19320     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2438258..2449250
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FLP15_RS11570 (FLP15_11570) - 2438550..2439380 (-) 831 WP_142767236.1 aminoglycoside 6-adenylyltransferase -
  FLP15_RS11575 (FLP15_11575) pepF 2439843..2441636 (-) 1794 WP_142767237.1 oligoendopeptidase F Regulator
  FLP15_RS11580 (FLP15_11580) - 2442272..2443132 (-) 861 WP_142767238.1 HAD-IIB family hydrolase -
  FLP15_RS11585 (FLP15_11585) coiA 2443258..2444250 (-) 993 WP_142767239.1 competence protein CoiA family protein Machinery gene
  FLP15_RS11590 (FLP15_11590) - 2444410..2445495 (-) 1086 WP_142767240.1 YdcF family protein -
  FLP15_RS11595 (FLP15_11595) - 2445747..2447168 (-) 1422 WP_142767241.1 NCS2 family permease -
  FLP15_RS11600 (FLP15_11600) - 2447734..2448557 (+) 824 Protein_2323 HAD family hydrolase -
  FLP15_RS11605 (FLP15_11605) - 2448725..2449243 (+) 519 WP_142767242.1 DoxX family protein -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 38710.58 Da        Isoelectric Point: 9.6967

>NTDB_id=371507 FLP15_RS11585 WP_142767239.1 2443258..2444250(-) (coiA) [Lactococcus protaetiae strain KACC 19320]
MLTAIDEKNKLVNLLESSPGELTGQYFCPVCKTEVVLKNGNIKITHFAHKTLRNCESWTENESVQHLTLKKLLYRWFKKS
EKVEVEKYLPALNQTPDLLVNDNIAIEVQCSPLSLKRLKERTENYQTHGYSVIWLMGKKLWLGHQLTELQKNLMYFSENR
GFYFWELDLERKKLRLKSLIHQDLRGNILHLTEEILFGHGELLAQLRRPFSAQAPLSLSVSTDRGLAHFVRQQLFHRSTK
WLEIQEKYYQQGKNLLTENFDKPYIAPPGLNLLSVSTDKFSSANFTQITQNITPYYQNFLENFKKNPQNKLYPPRFYAII
KEVNNETKAK

Nucleotide


Download         Length: 993 bp        

>NTDB_id=371507 FLP15_RS11585 WP_142767239.1 2443258..2444250(-) (coiA) [Lactococcus protaetiae strain KACC 19320]
ATGCTGACAGCGATTGATGAAAAAAATAAACTGGTCAATTTATTGGAAAGTTCTCCAGGAGAGCTGACAGGACAATATTT
TTGCCCCGTTTGCAAAACAGAAGTTGTCTTGAAAAACGGGAATATAAAAATTACACATTTTGCGCACAAGACTTTACGAA
ATTGTGAATCGTGGACTGAGAATGAGTCTGTACAACATTTAACGTTAAAAAAGTTACTCTATCGTTGGTTCAAAAAGTCT
GAAAAAGTGGAAGTAGAAAAGTACCTTCCGGCTCTAAATCAAACCCCTGATTTGTTGGTCAATGATAACATTGCAATAGA
AGTTCAATGTTCCCCTCTTTCGCTCAAGCGCCTAAAAGAACGAACAGAAAACTATCAAACTCATGGTTATTCTGTGATTT
GGCTAATGGGAAAGAAATTATGGCTGGGTCATCAACTGACAGAACTTCAAAAAAATTTGATGTATTTTTCTGAAAATCGA
GGATTTTATTTCTGGGAACTTGATTTAGAACGAAAAAAATTAAGATTAAAATCATTGATTCATCAGGACTTGAGGGGCAA
CATTTTACATTTAACAGAGGAAATATTATTTGGTCATGGAGAACTGTTGGCACAGTTGCGTCGCCCTTTTTCCGCACAAG
CTCCATTATCATTATCTGTCAGTACTGACAGAGGACTTGCTCATTTTGTAAGGCAACAACTCTTTCATCGCTCAACAAAA
TGGTTGGAAATTCAAGAAAAATATTATCAACAAGGGAAAAATTTACTGACAGAAAACTTTGACAAGCCTTACATTGCACC
GCCAGGTCTCAATTTACTTTCTGTCAGTACTGACAAGTTTTCATCAGCAAATTTTACACAAATTACACAAAATATAACGC
CTTACTATCAAAATTTTTTAGAAAATTTCAAAAAAAATCCGCAAAACAAGCTCTATCCTCCTCGTTTCTATGCTATAATA
AAAGAAGTTAACAATGAAACAAAGGCAAAATAG

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-252)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A514ZAS5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Lactococcus lactis subsp. cremoris KW2

62.577

98.788

0.618
  coiA Streptococcus mitis NCTC 12261

45.483

97.273

0.442
  coiA Streptococcus pneumoniae TIGR4

45.201

97.879

0.442
  coiA Streptococcus pneumoniae Rx1

44.892

97.879

0.439
  coiA Streptococcus pneumoniae D39

44.892

97.879

0.439
  coiA Streptococcus pneumoniae R6

44.892

97.879

0.439

Multiple sequence alignment