Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   G4V51_RS12330 Genome accession   NZ_CP048908
Coordinates   2104427..2104912 (-) Length   161 a.a.
NCBI ID   WP_125121586.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain SRRSH203     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2099427..2109912
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G4V51_RS12320 - 2100022..2100527 (-) 506 Protein_2127 pilin -
  G4V51_RS12495 - 2101343..2101461 (-) 119 Protein_2128 pilin -
  G4V51_RS10990 - 2101584..2101904 (-) 321 Protein_2129 pilin -
  G4V51_RS12325 - 2101965..2102348 (-) 384 Protein_2130 pilin -
  G4V51_RS10995 lpxC 2102493..2103416 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  G4V51_RS11000 - 2103910..2104292 (-) 383 Protein_2132 pilin -
  G4V51_RS12330 pilE 2104427..2104912 (-) 486 WP_125121586.1 pilin Machinery gene
  G4V51_RS11015 - 2104969..2105353 (-) 385 Protein_2134 pilin -
  G4V51_RS12335 pilE 2105488..2105973 (-) 486 WP_125121586.1 pilin Machinery gene
  G4V51_RS11030 - 2106030..2106377 (-) 348 Protein_2136 pilin -
  G4V51_RS11035 - 2106430..2106823 (-) 394 Protein_2137 pilin -
  G4V51_RS11040 - 2106958..2107400 (-) 443 Protein_2138 pilin -
  G4V51_RS12500 pilE 2107936..2108586 (-) 651 WP_279380562.1 pilin Machinery gene
  G4V51_RS11050 pilE 2108594..2108911 (-) 318 WP_003697861.1 pilin Machinery gene
  G4V51_RS11055 - 2109241..2109432 (+) 192 WP_014580443.1 hypothetical protein -

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 17314.41 Da        Isoelectric Point: 9.7934

>NTDB_id=371463 G4V51_RS12330 WP_125121586.1 2104427..2104912(-) (pilE) [Neisseria gonorrhoeae strain SRRSH203]
MASSPTDIKGKYVKSVTVAKGVVTAQMASTGVNKEIQGKKLSLWGRRENGSVKWFCGQPVTRTDKANDDVTDDATATMNS
SNVNKEIQGKKLSLWARRQDGSVKWFCGQPVKRDNANADTVTADATGNDGKIDTKHLPSTCRDAASAGCIETPPTAFYKN
T

Nucleotide


Download         Length: 486 bp        

>NTDB_id=371463 G4V51_RS12330 WP_125121586.1 2104427..2104912(-) (pilE) [Neisseria gonorrhoeae strain SRRSH203]
GTGGCATCCTCCCCCACCGACATCAAAGGCAAATATGTTAAAAGCGTTACGGTCGCAAAAGGCGTCGTTACCGCCCAAAT
GGCTTCAACCGGCGTAAACAAAGAAATCCAAGGCAAAAAACTCTCCCTGTGGGGCAGGCGTGAAAACGGTTCGGTAAAAT
GGTTCTGCGGACAGCCGGTTACGCGCACCGACAAAGCCAACGACGACGTTACCGACGACGCCACCGCCACAATGAATTCA
AGCAACGTAAACAAAGAAATCCAAGGCAAAAAACTCTCCCTGTGGGCCAGGCGTCAAGACGGTTCGGTAAAATGGTTCTG
CGGACAGCCGGTTAAGCGCGACAACGCCAACGCCGACACCGTCACCGCCGACGCCACCGGCAACGACGGCAAAATCGACA
CCAAGCACCTGCCGTCAACCTGCCGCGACGCAGCATCTGCCGGTTGCATAGAAACACCACCTACGGCTTTCTATAAAAAT
ACCTAA

Domains

Predicted by InterProScan.

Pilin (bacterial filament) (Pilin)

(3-61)

Pilin (bacterial filament) (Pilin)

(72-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

49.66

91.304

0.453

Multiple sequence alignment