Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   FLM21_RS00530 Genome accession   NZ_CP041335
Coordinates   137810..139300 (-) Length   496 a.a.
NCBI ID   WP_148713693.1    Uniprot ID   -
Organism   Chitinolyticbacter meiyuanensis strain SYBC-H1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 132810..144300
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FLM21_RS00510 parE 133213..135186 (-) 1974 WP_148713689.1 DNA topoisomerase IV subunit B -
  FLM21_RS00515 - 135469..135822 (+) 354 WP_148713690.1 hypothetical protein -
  FLM21_RS00520 - 135795..136724 (-) 930 WP_187360027.1 NmrA family NAD(P)-binding protein -
  FLM21_RS00525 - 136863..137813 (+) 951 WP_148713692.1 AraC family transcriptional regulator -
  FLM21_RS00530 comM 137810..139300 (-) 1491 WP_148713693.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  FLM21_RS00535 - 139391..140428 (+) 1038 WP_246120794.1 sensor histidine kinase -
  FLM21_RS00540 - 140394..141149 (+) 756 WP_148713694.1 LytTR family DNA-binding domain-containing protein -
  FLM21_RS00545 - 141142..141552 (+) 411 WP_148713695.1 DUF2721 domain-containing protein -
  FLM21_RS00550 - 141616..141987 (-) 372 WP_148713696.1 diacylglycerol kinase -
  FLM21_RS00555 - 141989..142744 (-) 756 WP_148713697.1 BPSS1780 family membrane protein -
  FLM21_RS00560 - 142881..144080 (-) 1200 WP_148713698.1 acetate/propionate family kinase -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 51633.27 Da        Isoelectric Point: 7.6001

>NTDB_id=371293 FLM21_RS00530 WP_148713693.1 137810..139300(-) (comM) [Chitinolyticbacter meiyuanensis strain SYBC-H1]
MSLAIVHSRALLGLNAHPVVVEVHLANGLPAFNLVGLPDTEVRESRERVRAALTVSGFDFPARRITVNLAPADLPKSSGV
YDLAIAVGILVASGQLPADTLAQYEFAGELGLAGDLRPVRGGIALARAAHLAGRALIVPLLSASEAALIPQATVYGAQHL
LEICKHFAAGEMLTAVSTPTAAMSASYPDLADVRGQAQAKRALEIAAAGGHSILLVGPPGTGKSMLAKRLPGLLPPMSTE
EALEAAAIQSLGRGGFAPAQFGARPYRSPHHSASAVALVGGGSVPQPGEVSLAHHGVLFLDELPEFDRKVLEMLREPLEN
GQIQISRAAHAADFPARFQLVAAMNPCPCGYLGHPQKACRCTPDQVARYRGKLSGPLLDRVDLLVEVPALPETALTGAAD
GEASTAVRERVGGAWARQQARQGHANAALEAGQIDTHCTPDEAARALLGTALTRLGLSARAYHRVLKVARTIADLDGTAG
IGAGHVAEAIQYRRAL

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=371293 FLM21_RS00530 WP_148713693.1 137810..139300(-) (comM) [Chitinolyticbacter meiyuanensis strain SYBC-H1]
ATGTCCCTTGCCATCGTCCATAGCCGCGCCCTGTTGGGCCTCAATGCTCACCCTGTGGTGGTCGAGGTCCATCTGGCCAA
CGGCCTGCCTGCTTTCAACCTGGTGGGCCTGCCTGACACCGAAGTGAGGGAAAGCCGCGAACGGGTGCGCGCAGCACTCA
CCGTCTCTGGCTTCGACTTCCCGGCCCGTCGCATCACGGTGAACCTGGCACCGGCCGATCTCCCCAAGTCGTCCGGCGTT
TATGACCTCGCCATCGCCGTTGGCATCCTCGTCGCCAGCGGGCAGTTGCCTGCCGATACGCTCGCGCAGTACGAATTTGC
CGGTGAGCTGGGTTTGGCCGGCGATCTGCGCCCGGTGCGTGGTGGTATTGCGCTGGCACGCGCCGCCCATCTGGCCGGGC
GTGCGCTGATCGTGCCCTTGCTCAGCGCCAGCGAAGCCGCGTTGATCCCGCAAGCCACTGTCTACGGCGCGCAACACTTA
CTGGAAATTTGTAAGCATTTTGCGGCAGGCGAGATGCTAACCGCAGTTAGCACACCGACCGCAGCCATGTCAGCCAGCTA
TCCCGATCTGGCCGACGTACGGGGGCAGGCCCAGGCAAAGCGTGCGCTGGAAATCGCTGCCGCTGGCGGGCATAGCATCT
TGCTGGTCGGGCCGCCGGGTACCGGTAAGAGCATGCTGGCCAAGCGTTTACCCGGCTTGTTGCCGCCCATGTCCACCGAG
GAGGCGCTAGAGGCCGCGGCCATCCAGTCGCTGGGGCGAGGTGGCTTTGCACCTGCCCAGTTCGGCGCCCGGCCTTATCG
CAGCCCGCACCATTCCGCTTCGGCAGTGGCCTTGGTGGGCGGCGGTAGCGTACCGCAACCGGGTGAGGTATCGCTGGCGC
ATCACGGCGTTTTATTTCTGGACGAGCTCCCCGAGTTCGATCGAAAAGTGCTGGAGATGCTGCGAGAGCCGCTGGAAAAC
GGCCAGATCCAGATCAGCCGGGCCGCGCATGCCGCCGATTTCCCGGCGCGCTTCCAGCTGGTGGCGGCGATGAATCCATG
CCCTTGCGGTTACCTTGGTCATCCGCAGAAGGCGTGTCGCTGTACGCCGGATCAGGTTGCGCGCTATCGCGGCAAGCTGT
CCGGCCCGTTGCTGGATCGCGTCGATCTGCTGGTCGAGGTCCCGGCACTGCCGGAAACCGCGCTCACCGGTGCCGCTGAC
GGCGAAGCGAGCACTGCCGTGCGCGAGCGCGTCGGCGGTGCGTGGGCAAGGCAGCAAGCACGGCAAGGCCATGCCAATGC
GGCATTGGAGGCGGGGCAAATCGACACGCACTGTACGCCGGACGAGGCGGCCCGCGCGCTACTCGGTACAGCATTGACGC
GGCTGGGCCTGTCGGCCCGCGCCTACCATCGCGTGCTCAAGGTGGCGCGTACCATCGCCGATCTCGATGGCACCGCCGGC
ATTGGCGCTGGCCATGTCGCCGAAGCCATCCAGTATCGCCGCGCGCTTTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-393)

Subunit ChlI of Mg-chelatase (ChlI)

(21-139)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.141

99.798

0.54
  comM Vibrio campbellii strain DS40M4

53.939

99.798

0.538
  comM Haemophilus influenzae Rd KW20

51.703

100

0.52
  comM Glaesserella parasuis strain SC1401

51.303

100

0.516
  comM Legionella pneumophila str. Paris

49.4

100

0.498
  comM Legionella pneumophila strain ERS1305867

49.4

100

0.498
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.527

100

0.462

Multiple sequence alignment