Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   FLM48_RS02090 Genome accession   NZ_CP041329
Coordinates   416528..418048 (-) Length   506 a.a.
NCBI ID   WP_179023127.1    Uniprot ID   -
Organism   Shewanella sp. Scap07     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 411528..423048
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FLM48_RS02070 (FLM48_02085) - 412024..413169 (+) 1146 WP_028773659.1 BamA/TamA family outer membrane protein -
  FLM48_RS02075 (FLM48_02090) - 413367..414461 (+) 1095 WP_179023124.1 branched-chain amino acid aminotransferase -
  FLM48_RS02080 (FLM48_02095) - 414546..415484 (-) 939 WP_179023125.1 acyltransferase -
  FLM48_RS02085 (FLM48_02100) - 415492..416394 (-) 903 WP_028773652.1 acyltransferase -
  FLM48_RS02090 (FLM48_02105) comM 416528..418048 (-) 1521 WP_179023127.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  FLM48_RS02095 (FLM48_02110) - 418146..418949 (-) 804 WP_256871020.1 GGDEF domain-containing protein -
  FLM48_RS02100 (FLM48_02115) - 419091..419489 (+) 399 WP_037471120.1 YkgJ family cysteine cluster protein -
  FLM48_RS02105 (FLM48_02120) - 419501..420316 (-) 816 WP_179023129.1 ABC transporter substrate-binding protein -
  FLM48_RS02110 (FLM48_02125) ilvY 420395..421267 (-) 873 WP_179023131.1 HTH-type transcriptional activator IlvY -
  FLM48_RS02115 (FLM48_02130) ilvC 421431..422912 (+) 1482 WP_179023133.1 ketol-acid reductoisomerase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55546.56 Da        Isoelectric Point: 7.9934

>NTDB_id=371216 FLM48_RS02090 WP_179023127.1 416528..418048(-) (comM) [Shewanella sp. Scap07]
MAIACVSTRANKGVEAPAVTVEVHLSNGLPAFNLVGLPETSVKEAKERVRSAIINAGFEFPMKRITVNLAPADLPKQGGR
YDLPIAIGILAASKQVPMQSLNDHEFVGELALSGQVRYCQGLLPVIVDASKQHSKLVMPVDNRQEAELVGYQHCYFATHL
QQLSEYLHGQSLLPGIDSQTHWVSEEPNEQMGCLTDVIGQYQAKQALEIAAAGQHNLLMLGSPGTGKTMLASRIIGLLPD
LNYDQALEVAAIHSVAGQPLSVQRFYRRPFRTPHHTSSATALVGGGTIPKPGEISLAHHGVLFLDEIAEFPRKVLDCLRE
PMETGEVTISRAAAKLRFDSRFQLIAAMNPSPCGDVNQSRANSDQIQRYLSRLSGPFLDRFDLTIEVPKLPEGTLTKTDN
SGETSAEVAQRVLLAREIQLQRFGVLNSQLSGKQLKQAGFQHADLQFLEQSVHKLGLSVRSFHRLQRVARTIADLQQSQQ
VCRRHIAQALGYRAMDRLLNSLNSPY

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=371216 FLM48_RS02090 WP_179023127.1 416528..418048(-) (comM) [Shewanella sp. Scap07]
ATGGCTATAGCCTGTGTCAGTACACGCGCCAATAAAGGGGTGGAAGCCCCAGCGGTTACCGTAGAAGTCCACCTCAGTAA
CGGCTTACCTGCATTTAATCTGGTTGGCCTACCAGAAACTTCAGTTAAAGAAGCGAAAGAGCGAGTCCGCAGCGCAATCA
TTAATGCTGGGTTTGAGTTTCCCATGAAGCGTATCACCGTCAACTTAGCCCCCGCTGACCTGCCTAAACAGGGCGGTCGC
TATGATTTACCCATCGCTATCGGCATTTTAGCGGCATCAAAGCAGGTCCCGATGCAATCACTTAACGACCATGAATTTGT
AGGCGAACTGGCTCTATCCGGTCAAGTCCGCTACTGCCAAGGGCTGTTACCGGTAATTGTGGATGCCAGCAAACAACACA
GTAAGCTGGTTATGCCGGTAGATAACCGTCAGGAAGCTGAACTGGTCGGTTACCAACACTGCTACTTTGCCACTCATCTG
CAGCAACTCAGTGAATATTTACATGGCCAATCACTGCTGCCTGGAATAGATAGCCAAACCCACTGGGTGAGTGAAGAACC
TAATGAGCAAATGGGCTGCCTTACCGATGTAATTGGCCAATACCAAGCCAAACAGGCCTTAGAGATAGCCGCAGCGGGGC
AACACAACTTACTGATGTTGGGCAGCCCTGGGACCGGCAAAACGATGCTCGCCAGCCGAATTATCGGCCTACTGCCCGAT
CTTAACTACGATCAAGCACTGGAAGTCGCCGCTATTCACTCGGTGGCCGGTCAACCGCTATCAGTGCAACGTTTCTATCG
ACGTCCGTTTCGAACGCCACACCATACCAGCTCAGCCACGGCACTGGTCGGCGGCGGGACCATTCCCAAACCGGGAGAGA
TCTCCTTAGCTCATCATGGTGTGTTGTTTTTAGATGAGATCGCCGAGTTCCCACGTAAGGTACTTGATTGTTTGCGTGAA
CCGATGGAAACGGGAGAAGTCACCATATCTCGTGCTGCCGCTAAACTAAGATTCGATAGCCGTTTTCAGCTCATCGCAGC
CATGAACCCCAGCCCATGTGGTGATGTAAATCAGTCTCGAGCCAATAGTGATCAAATCCAGCGCTACTTGTCTCGTCTAT
CGGGGCCATTTCTCGATCGATTCGATCTGACCATTGAAGTCCCTAAACTACCTGAAGGCACCCTGACAAAAACCGACAAC
AGTGGTGAAACCAGCGCCGAAGTGGCGCAGCGGGTACTGCTTGCCAGAGAGATCCAACTGCAACGTTTTGGCGTGCTCAA
TAGCCAGCTCAGTGGTAAGCAGCTAAAACAAGCGGGCTTCCAGCATGCCGACCTGCAATTTTTAGAACAAAGTGTGCATA
AATTAGGGTTGTCAGTCCGTAGTTTTCATCGACTCCAACGGGTCGCTCGTACTATTGCGGATTTACAGCAAAGTCAACAA
GTTTGCCGCCGTCACATAGCCCAAGCACTAGGCTATCGCGCCATGGATCGATTACTCAACAGCTTAAACAGTCCCTATTA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

56.947

100

0.575
  comM Vibrio cholerae strain A1552

56.607

100

0.567
  comM Vibrio campbellii strain DS40M4

54.241

100

0.543
  comM Glaesserella parasuis strain SC1401

54.348

100

0.543
  comM Legionella pneumophila str. Paris

48.031

100

0.482
  comM Legionella pneumophila strain ERS1305867

48.031

100

0.482
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.285

98.617

0.417

Multiple sequence alignment