Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   FLM54_RS00725 Genome accession   NZ_CP041327
Coordinates   150723..152234 (+) Length   503 a.a.
NCBI ID   WP_178954569.1    Uniprot ID   -
Organism   Pseudoalteromonas sp. Scap25     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 145723..157234
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FLM54_RS00685 (FLM54_00685) - 145736..146362 (+) 627 WP_178954566.1 dUTP diphosphatase -
  FLM54_RS00690 (FLM54_00690) yrfG 146391..147038 (-) 648 WP_178954567.1 GMP/IMP nucleotidase -
  FLM54_RS00695 (FLM54_00695) nudE 147303..147875 (+) 573 WP_008108276.1 ADP compounds hydrolase NudE -
  FLM54_RS00700 (FLM54_00700) cysQ 147868..148665 (+) 798 WP_008108277.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  FLM54_RS00720 (FLM54_00720) - 149808..150422 (+) 615 WP_008108278.1 trimeric intracellular cation channel family protein -
  FLM54_RS00725 (FLM54_00725) comM 150723..152234 (+) 1512 WP_178954569.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  FLM54_RS00730 (FLM54_00730) - 152239..152943 (-) 705 WP_138605934.1 response regulator transcription factor -
  FLM54_RS00735 (FLM54_00735) - 153111..155603 (-) 2493 WP_178954571.1 S9 family peptidase -
  FLM54_RS00740 (FLM54_00740) - 155701..156768 (+) 1068 WP_138605937.1 CNNM domain-containing protein -

Sequence

Protein


Download         Length: 503 a.a.        Molecular weight: 55039.17 Da        Isoelectric Point: 6.9576

>NTDB_id=371192 FLM54_RS00725 WP_178954569.1 150723..152234(+) (comM) [Pseudoalteromonas sp. Scap25]
MSLARIFSRAQVGINAPEVMVEVHLGNGLPAFHIVGLPEASVKEAKDRVRSALENSQFGFPDQRITVNLAPADLPKDGGR
FDLAIAVGILVASGQIVCPDIHKYEFYGELALNGEIRAVNAILPSVLGAKEQNRCCFLPLENDSLASLVSGVKRKAVSSI
QEVWGDLLNQQPLPLNIAYPDCTQAPDFLLDLSDVKGQPGAKRVLEIAAAGGHNLLFLGPPGTGKSMLAQRMATIMPTMS
DDEAIDTAALYSIIGHSIDLTNWRQRPFRNPHHTCSAVALVGGSSNPKPGEISLAHNGVLFLDELPEFERKVLDSLREPM
ETGTVTISRAARQMEFPAQFQLIAALNPSPTGCHHDKRATPDQVMRYLSRVSGPFIDRIDLQIELPRLSSVELQSTTTEE
TSAEVRARVEAAYAVQLKRQGKVNARLNNKEMSLHCELPPAELQFLARASEKLALSPRSYHRVIKVARTISDLKGAPQIS
LIELKEALNYRAFERLLSQLTQH

Nucleotide


Download         Length: 1512 bp        

>NTDB_id=371192 FLM54_RS00725 WP_178954569.1 150723..152234(+) (comM) [Pseudoalteromonas sp. Scap25]
ATGTCGTTAGCCCGTATATTTTCTCGCGCGCAGGTGGGGATCAACGCCCCTGAGGTGATGGTTGAAGTGCATTTAGGGAA
TGGTTTACCCGCCTTTCATATCGTCGGCTTACCTGAGGCGTCGGTTAAAGAGGCCAAGGATAGAGTACGTAGTGCTCTAG
AAAACTCGCAATTTGGATTTCCCGATCAACGTATTACCGTTAATTTAGCGCCTGCCGATCTTCCTAAAGATGGTGGGCGA
TTTGACCTTGCGATTGCGGTAGGTATTTTGGTCGCATCGGGGCAAATAGTCTGCCCTGATATTCATAAGTATGAATTTTA
CGGTGAGCTTGCACTTAATGGTGAAATACGTGCTGTAAATGCCATTTTGCCTTCAGTGCTTGGTGCTAAAGAGCAAAATC
GTTGCTGTTTTCTGCCTCTTGAAAACGACAGTTTGGCCAGCCTTGTCAGTGGTGTAAAACGAAAAGCCGTCAGTTCTATT
CAAGAGGTATGGGGAGACTTGCTCAATCAACAACCTTTACCGCTTAACATTGCCTACCCTGATTGCACCCAAGCGCCAGA
TTTTTTACTCGATTTAAGCGATGTAAAAGGCCAACCTGGTGCTAAACGTGTATTAGAAATTGCCGCTGCTGGTGGGCATA
ATTTACTATTTTTAGGTCCACCAGGGACCGGAAAATCAATGCTTGCACAACGAATGGCCACAATAATGCCAACCATGTCT
GATGATGAAGCCATTGATACTGCTGCTTTATATTCAATTATTGGCCACTCAATTGATTTAACCAATTGGCGTCAGCGACC
GTTTCGCAATCCGCATCATACCTGTTCTGCAGTAGCGCTAGTGGGTGGTTCGTCTAACCCTAAACCCGGTGAAATATCGC
TAGCGCATAATGGTGTTTTGTTTTTAGATGAGCTCCCTGAATTTGAGCGTAAAGTGCTAGACTCGCTACGCGAGCCAATG
GAAACCGGAACAGTGACGATTTCGCGCGCGGCCAGACAAATGGAATTTCCAGCGCAGTTTCAGCTTATTGCAGCACTTAA
TCCCAGTCCGACAGGGTGTCATCATGATAAACGGGCGACACCCGATCAGGTGATGCGCTATTTATCGCGAGTATCGGGGC
CGTTTATTGACAGAATTGATTTGCAAATTGAACTACCAAGGTTGAGCAGCGTGGAGCTACAAAGTACAACTACAGAAGAA
ACCAGTGCTGAGGTGAGGGCGCGAGTAGAAGCAGCTTATGCAGTTCAGCTTAAACGCCAAGGTAAAGTAAATGCGCGGTT
AAATAACAAAGAGATGAGCTTGCACTGTGAGTTACCACCTGCAGAACTGCAGTTTTTAGCCAGAGCCAGTGAAAAGCTGG
CGCTATCACCGCGCTCTTATCATAGAGTAATTAAAGTGGCGCGAACTATTAGTGATTTAAAAGGTGCGCCACAAATCAGT
TTAATTGAGCTTAAAGAAGCGCTTAATTATCGGGCATTTGAGCGTTTATTATCGCAGTTAACCCAACACTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(399-491)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.556

100

0.557
  comM Haemophilus influenzae Rd KW20

53.937

100

0.545
  comM Glaesserella parasuis strain SC1401

53.953

100

0.543
  comM Vibrio campbellii strain DS40M4

53.968

100

0.541
  comM Legionella pneumophila str. Paris

49.698

98.807

0.491
  comM Legionella pneumophila strain ERS1305867

49.698

98.807

0.491
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

41.897

100

0.421

Multiple sequence alignment