Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   FK537_RS09335 Genome accession   NZ_CP041291
Coordinates   1857911..1858630 (+) Length   239 a.a.
NCBI ID   WP_005180513.1    Uniprot ID   N9KYM2
Organism   Acinetobacter indicus strain 94-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1852911..1863630
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FK537_RS09320 (FK537_09390) ponA 1853473..1856049 (-) 2577 WP_104470267.1 penicillin-binding protein PBP1a -
  FK537_RS09325 (FK537_09395) pilM 1856221..1857279 (+) 1059 WP_005180518.1 pilus assembly protein PilM Machinery gene
  FK537_RS09330 (FK537_09400) pilN 1857279..1857914 (+) 636 WP_005180516.1 PilN domain-containing protein Machinery gene
  FK537_RS09335 (FK537_09405) pilO 1857911..1858630 (+) 720 WP_005180513.1 type 4a pilus biogenesis protein PilO Machinery gene
  FK537_RS09340 (FK537_09410) pilP 1858630..1859157 (+) 528 WP_168370223.1 pilus assembly protein PilP Machinery gene
  FK537_RS09345 (FK537_09415) pilQ 1859218..1861356 (+) 2139 WP_168370224.1 type IV pilus secretin PilQ Machinery gene
  FK537_RS09350 (FK537_09420) aroK 1861393..1861935 (+) 543 WP_075167858.1 shikimate kinase AroK -
  FK537_RS09355 (FK537_09425) aroB 1861958..1863040 (+) 1083 WP_168369948.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 239 a.a.        Molecular weight: 27087.71 Da        Isoelectric Point: 5.1311

>NTDB_id=371007 FK537_RS09335 WP_005180513.1 1857911..1858630(+) (pilO) [Acinetobacter indicus strain 94-2]
MSLDQYEEMNQDPVAAPKKKMTLDKFLQQWNTLDPNNYGSWPFSVKLTIWIFIIILIAFLGYFLAIKPKLDAISNARAQE
QNLLNEFREKDSKLRNLQQYQAQLQEMEANFNQQLQQLPKETEIPGLVEDVNVTGVNSGLRFKNIRLENEIKQEFFIEQP
ISIEATGDYHAFGSFVSGTAALPRIVTMHDFTITAGENKEKKTDIPQITYVAKAKTYRYVGNTDAQAGNSTTPATGAAQ

Nucleotide


Download         Length: 720 bp        

>NTDB_id=371007 FK537_RS09335 WP_005180513.1 1857911..1858630(+) (pilO) [Acinetobacter indicus strain 94-2]
ATGAGTCTCGATCAATATGAAGAAATGAATCAGGATCCTGTTGCTGCGCCAAAGAAAAAAATGACGCTGGATAAATTCCT
GCAGCAATGGAATACCTTAGATCCGAATAACTATGGCAGCTGGCCGTTTTCCGTCAAGCTGACCATCTGGATCTTTATCA
TTATTTTAATTGCCTTCCTGGGCTATTTCCTGGCCATCAAGCCGAAGCTGGATGCAATTTCCAATGCGCGTGCACAAGAG
CAGAACCTGCTGAATGAGTTTCGTGAAAAAGATTCCAAACTGCGTAACTTGCAGCAATATCAGGCGCAGTTACAGGAAAT
GGAAGCCAACTTTAACCAGCAGCTACAACAGTTGCCAAAAGAAACCGAAATTCCAGGTCTGGTTGAAGATGTCAACGTCA
CGGGTGTGAATTCAGGCTTAAGATTTAAAAATATCCGTCTGGAAAATGAAATCAAGCAAGAGTTCTTTATCGAGCAGCCA
ATTTCGATTGAAGCCACCGGTGATTATCACGCTTTTGGTTCTTTTGTGAGTGGTACAGCGGCTTTACCGCGAATTGTGAC
CATGCATGATTTCACCATCACTGCAGGTGAAAACAAGGAAAAGAAAACCGATATTCCACAAATTACCTATGTCGCGAAAG
CCAAGACCTATCGCTATGTCGGGAATACCGATGCACAGGCAGGGAATAGTACGACTCCAGCCACAGGAGCAGCACAATGA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(74-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9KYM2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

69.748

99.582

0.695
  comO Acinetobacter baylyi ADP1

67.213

100

0.686

Multiple sequence alignment