Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   FK537_RS09345 Genome accession   NZ_CP041291
Coordinates   1859218..1861356 (+) Length   712 a.a.
NCBI ID   WP_168370224.1    Uniprot ID   -
Organism   Acinetobacter indicus strain 94-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1854218..1866356
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FK537_RS09325 (FK537_09395) pilM 1856221..1857279 (+) 1059 WP_005180518.1 pilus assembly protein PilM Machinery gene
  FK537_RS09330 (FK537_09400) pilN 1857279..1857914 (+) 636 WP_005180516.1 PilN domain-containing protein Machinery gene
  FK537_RS09335 (FK537_09405) pilO 1857911..1858630 (+) 720 WP_005180513.1 type 4a pilus biogenesis protein PilO Machinery gene
  FK537_RS09340 (FK537_09410) pilP 1858630..1859157 (+) 528 WP_168370223.1 pilus assembly protein PilP Machinery gene
  FK537_RS09345 (FK537_09415) pilQ 1859218..1861356 (+) 2139 WP_168370224.1 type IV pilus secretin PilQ Machinery gene
  FK537_RS09350 (FK537_09420) aroK 1861393..1861935 (+) 543 WP_075167858.1 shikimate kinase AroK -
  FK537_RS09355 (FK537_09425) aroB 1861958..1863040 (+) 1083 WP_168369948.1 3-dehydroquinate synthase -
  FK537_RS09360 (FK537_09430) - 1863053..1863889 (+) 837 WP_104483915.1 hypothetical protein -

Sequence

Protein


Download         Length: 712 a.a.        Molecular weight: 77313.67 Da        Isoelectric Point: 5.0794

>NTDB_id=371009 FK537_RS09345 WP_168370224.1 1859218..1861356(+) (pilQ) [Acinetobacter indicus strain 94-2]
MNNLFRQFSMGAVAMAVMQVANAQVSITNIVPMQIPGQGTEIRVMFNGLPSQPAAYQLEQPSRLVLDFDKAQQTLKQATI
PVATREASSVDVSSDAQRARLTVNLAEAGAFTTRVEGNTFILKINSTQPTATPVAVQQTAQGVSNIGFQRGAEGEGQVVI
DLAGSNTPVDVQQQGSKIIVRTLGNKIPAHLARRLNVNDFATPVSTIDAQNDGGNGVITIQSAGSYEYMAYQAENKLTIS
LKRPVDKNPFKPRAAQSYTGKKISLDFQDIEVRRVLQLLADFTGINMVAADTVQGNITLRLKDVPWDQALDIILKTKNLD
KRRNGNVIWIAPVAELIKAEEEEAKAIAQSVKLAPLQTEYIQLNYAKAADIEKLITDGKNASNSRGGTNSGSGADPLGDS
VGSLLSPRGTVSVDPRTNTLIINDTAQKIDQIRGMIDLLDVSVKQVMIEARIVRATTDFTKEMGVKWGILSQGITNNNHL
LVGGSDTTLWNLREPELDEERGGYTYEIERPQNLNVDLGVTSAGASRIAFGLISLSDFMLDLELSALQADGYGEVISTPK
VLTADKQKARVESGFQVPYQSSEGGGADAVSKTEFKDIVLSLDVLPSITPDGKVQMQLDIKNDSIAGVTQQGEFYLNKNM
LNTNVLVDNGETVVLGGIFEQQTVNQQTKVPFLGDIPYLGRLFRKDIKSDNKRELLIFVTPRIVNDSVSRNH

Nucleotide


Download         Length: 2139 bp        

>NTDB_id=371009 FK537_RS09345 WP_168370224.1 1859218..1861356(+) (pilQ) [Acinetobacter indicus strain 94-2]
ATGAACAATTTGTTCCGTCAGTTTTCAATGGGCGCTGTTGCGATGGCCGTCATGCAAGTGGCCAATGCGCAGGTCAGCAT
TACCAATATTGTACCAATGCAAATTCCAGGACAAGGTACTGAAATTCGTGTCATGTTCAATGGCTTGCCATCTCAGCCTG
CAGCCTATCAGCTTGAGCAGCCATCACGTTTGGTGCTGGATTTTGATAAAGCCCAGCAAACCTTAAAGCAGGCCACCATT
CCGGTTGCAACCCGGGAAGCCAGCTCGGTGGATGTCAGTTCCGATGCCCAGCGTGCACGTTTAACGGTCAATCTGGCTGA
AGCGGGTGCTTTTACTACCCGTGTCGAAGGCAATACTTTTATTCTTAAAATTAACAGCACTCAGCCAACCGCAACACCAG
TAGCTGTACAGCAGACGGCTCAAGGCGTATCAAATATTGGCTTCCAGCGCGGTGCGGAAGGGGAAGGTCAGGTGGTAATT
GACCTGGCAGGCAGCAATACCCCGGTCGATGTGCAACAGCAAGGCAGTAAAATTATTGTCCGTACTTTGGGCAATAAAAT
TCCTGCGCATCTGGCACGCCGTTTAAACGTCAATGATTTTGCCACCCCGGTATCTACCATTGATGCACAAAATGATGGCG
GTAATGGGGTAATTACTATTCAGTCTGCCGGAAGCTATGAATATATGGCGTATCAGGCAGAAAATAAACTGACCATCAGT
CTGAAACGTCCGGTAGATAAGAACCCGTTCAAACCGCGTGCAGCACAAAGCTATACCGGCAAAAAGATTTCTTTAGATTT
CCAGGACATTGAAGTGCGCCGTGTGCTGCAGTTACTGGCTGATTTTACCGGAATTAACATGGTTGCCGCCGATACGGTAC
AAGGCAATATCACCTTACGTCTCAAAGATGTGCCGTGGGATCAGGCACTAGATATTATTTTAAAAACCAAAAATCTGGAT
AAACGCCGTAATGGCAATGTGATCTGGATTGCACCCGTCGCAGAGCTGATCAAGGCCGAAGAAGAAGAAGCCAAAGCGAT
TGCACAAAGCGTCAAGCTGGCGCCGCTGCAAACCGAATATATCCAGTTAAATTATGCCAAGGCTGCTGATATTGAGAAAC
TGATTACTGATGGTAAAAACGCATCCAATTCTCGTGGCGGCACAAATTCGGGTTCAGGGGCAGATCCACTCGGTGATAGC
GTCGGTAGTCTACTCAGCCCTCGCGGTACGGTGTCAGTCGATCCACGAACCAATACCCTGATTATTAATGATACCGCGCA
AAAGATTGACCAGATTCGCGGCATGATTGACTTACTGGATGTGTCAGTGAAACAGGTGATGATTGAAGCGCGTATTGTGC
GTGCCACCACCGACTTCACCAAAGAGATGGGGGTGAAGTGGGGTATCCTGTCACAGGGTATCACGAATAATAACCATCTT
TTGGTCGGTGGTAGTGATACCACACTGTGGAATTTACGTGAGCCAGAGCTTGATGAAGAGCGTGGTGGTTATACCTATGA
AATTGAACGTCCACAAAACCTGAATGTCGATTTAGGAGTGACCAGTGCAGGTGCTAGCCGCATTGCCTTTGGTTTAATCA
GTTTATCTGACTTTATGCTAGATTTGGAATTGTCTGCATTACAAGCCGATGGTTATGGTGAAGTGATTTCGACACCAAAA
GTCCTGACTGCAGACAAGCAAAAAGCACGTGTAGAGTCTGGTTTTCAAGTCCCATATCAATCCTCTGAAGGAGGGGGGGC
TGATGCTGTTTCGAAAACTGAATTTAAAGATATTGTTTTAAGCTTGGATGTGCTGCCAAGTATTACCCCAGATGGTAAAG
TACAGATGCAGCTCGATATTAAGAATGACAGTATTGCGGGGGTAACTCAGCAAGGTGAGTTCTACTTAAATAAAAATATG
CTTAATACTAATGTTTTGGTAGATAATGGTGAAACTGTCGTGCTCGGTGGTATTTTTGAGCAGCAGACAGTTAATCAGCA
AACCAAAGTGCCATTCCTGGGGGATATTCCGTATTTAGGCCGTTTATTCCGTAAAGATATTAAATCGGACAATAAACGTG
AGTTGCTGATTTTTGTGACACCACGAATTGTTAATGACAGTGTTTCAAGAAATCATTAA

Domains

Predicted by InterproScan.

AMIN domain (AMIN)

(41-121)

Bacterial type II/III secretion system short domain (Secretin_N)

(359-445)

Bacterial type II and III secretion system protein (Secretin)

(546-704)

Secretin and TonB N terminus short domain (STN)

(290-332)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

76.87

100

0.779
  pilQ Acinetobacter baumannii strain A118

76.731

100

0.778
  comQ Acinetobacter baylyi ADP1

74.51

100

0.747
  pilQ Pseudomonas aeruginosa PAK

39.943

99.157

0.396
  pilQ Legionella pneumophila strain Lp02

38.19

99.298

0.379
  pilQ Legionella pneumophila strain ERS1305867

38.19

99.298

0.379

Multiple sequence alignment