Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   FK537_RS07045 Genome accession   NZ_CP041291
Coordinates   1378309..1379796 (+) Length   495 a.a.
NCBI ID   WP_168369807.1    Uniprot ID   -
Organism   Acinetobacter indicus strain 94-2     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1373309..1384796
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FK537_RS07020 (FK537_07090) ribD 1374221..1375309 (-) 1089 WP_168369806.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  FK537_RS07025 (FK537_07095) nrdR 1375333..1375791 (-) 459 WP_005181550.1 transcriptional regulator NrdR -
  FK537_RS07030 (FK537_07100) - 1375931..1377334 (-) 1404 WP_075174920.1 ammonium transporter -
  FK537_RS07035 (FK537_07105) glnK 1377397..1377735 (-) 339 WP_004650081.1 P-II family nitrogen regulator -
  FK537_RS07040 (FK537_07110) - 1378012..1378239 (+) 228 WP_005181545.1 accessory factor UbiK family protein -
  FK537_RS07045 (FK537_07115) comM 1378309..1379796 (+) 1488 WP_168369807.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  FK537_RS07050 (FK537_07120) - 1379856..1380635 (-) 780 WP_103799959.1 TorF family putative porin -
  FK537_RS07055 (FK537_07125) - 1381396..1382709 (+) 1314 WP_104484380.1 OprD family outer membrane porin -
  FK537_RS07060 (FK537_07130) ppa 1382815..1383339 (-) 525 WP_016659718.1 inorganic diphosphatase -
  FK537_RS07065 (FK537_07135) - 1383457..1383858 (-) 402 WP_005181530.1 MAPEG family protein -
  FK537_RS07070 (FK537_07140) - 1383962..1384348 (+) 387 WP_075167837.1 hypothetical protein -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54100.08 Da        Isoelectric Point: 7.5488

>NTDB_id=370999 FK537_RS07045 WP_168369807.1 1378309..1379796(+) (comM) [Acinetobacter indicus strain 94-2]
MSFAKIYTRGLLGLNAPSIEVEVHLSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLPIALGILIASGQLPEQAAENLEFIGELALDGQLRPVTGTLSIAIACQAAGHQLVLPEPNAQEAAQLPDFQVFAASHL
KQVCEHLAQAAPLQPFAASSETRLERYAFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLASILPPLNM
QENLEVASIYSIANTPHRFGQRPFRAPHHTASAIALVGGGSHPKPGEITLAHLGVLFLDELPEFDRKVLEVLRQPLESKE
IVISRASRQITFPASFQLIAAMNPCPCGYAFNQDIRCQCSAESIKRYQNRISGPLLDRIDLHIDVPPLQAHELQSTQPVE
DSATVRERVITAYELQIQRQNKLNMALTPKELEQFAPLNAQTRKMFELAQQKLNLSARAYHRVLRVARSIADLAENSEIQ
PQHLSEALSYRGQQS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=370999 FK537_RS07045 WP_168369807.1 1378309..1379796(+) (comM) [Acinetobacter indicus strain 94-2]
ATGTCTTTTGCCAAAATTTATACGCGGGGTCTGCTTGGACTGAATGCCCCGTCCATTGAAGTTGAAGTCCATTTAAGTCA
GGGTCTGCCCTCCTTAACCATTGTCGGTCTGGCCGAAGCCGCGGTCCGTGAAAGTAAAGACCGGGTTCGCTCGGCCATTA
TTAACAGTGGTTTTCAGTTTCCCACCAAACGTTTGACCATTAATCTGGCCCCGGCCGATTTACCCAAAGATGGCTCGCGT
CTGGATTTACCGATTGCCTTAGGCATTCTGATTGCTTCCGGACAATTACCCGAACAGGCCGCAGAAAACCTGGAATTTAT
TGGTGAACTGGCGCTGGATGGCCAATTGCGTCCGGTCACCGGCACTTTAAGTATTGCCATTGCCTGTCAGGCGGCCGGCC
ATCAACTGGTATTACCGGAACCCAATGCGCAGGAAGCCGCACAACTGCCTGACTTTCAGGTGTTTGCAGCCAGTCATCTG
AAACAGGTCTGTGAGCATCTGGCGCAGGCTGCGCCCCTGCAGCCTTTTGCGGCAAGCTCGGAAACCCGCTTGGAACGCTA
TGCTTTTGACCTGGCGGATGTCAAAGGACAGCTGCGACCTCGGCGTGCCCTGGAAATTGCCGCTGCCGGTGGCCATTCCC
TGCTTTTTAAAGGACCGCCCGGCACAGGCAAAACCCTCTTGGCCTCACGTCTGGCCAGTATTTTGCCGCCCCTGAATATG
CAGGAAAATCTTGAAGTTGCCAGTATTTATTCAATTGCCAATACCCCGCATCGCTTTGGACAGCGGCCATTTCGCGCCCC
GCATCATACCGCTTCAGCGATTGCGCTGGTCGGTGGTGGCTCGCATCCGAAACCGGGCGAAATTACCCTGGCCCATTTAG
GTGTGCTGTTTTTAGATGAACTGCCGGAGTTTGACCGTAAAGTGCTGGAGGTATTGCGGCAGCCCTTGGAATCCAAGGAA
ATTGTGATTTCTCGCGCGTCACGGCAGATTACCTTTCCGGCCAGTTTCCAGCTGATTGCGGCGATGAACCCCTGCCCGTG
TGGCTATGCATTTAATCAGGATATTCGCTGCCAATGTTCCGCAGAAAGTATTAAACGCTACCAGAACCGGATTTCTGGCC
CACTCCTGGATCGGATTGACCTGCATATCGATGTGCCTCCTCTGCAAGCTCATGAATTACAATCTACACAACCGGTAGAA
GATTCTGCAACCGTTAGGGAGCGTGTGATAACTGCCTACGAACTGCAAATACAAAGACAGAACAAGCTGAATATGGCATT
AACCCCAAAAGAATTAGAGCAATTTGCGCCACTAAATGCTCAGACCAGAAAAATGTTTGAACTTGCCCAACAAAAGTTAA
ATTTATCTGCCCGTGCTTATCATCGGGTATTACGAGTAGCACGAAGCATAGCTGATTTAGCTGAGAATTCAGAAATTCAG
CCTCAGCATTTATCGGAAGCTTTATCTTATCGAGGTCAGCAAAGCTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

51.2

100

0.517
  comM Glaesserella parasuis strain SC1401

50.902

100

0.513
  comM Vibrio cholerae strain A1552

50.909

100

0.509
  comM Vibrio campbellii strain DS40M4

50.505

100

0.505
  comM Legionella pneumophila strain ERS1305867

50.202

100

0.503
  comM Legionella pneumophila str. Paris

50.202

100

0.503
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.941

100

0.469

Multiple sequence alignment