NTDB

Overview

Name	comM	Type	Machinery gene
Locus tag	C8250_RS30370	Genome accession	NZ_CP048835
Coordinates	6767491..6769101 (+)	Length	536 a.a.
NCBI ID	WP_138356435.1	Uniprot ID	-
Organism	Streptomyces sp. So13.3
Function	DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 6762491..6774101

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C8250_RS30335 (C8250_030350)	lepB	6762593..6763303 (+)	711	WP_138356440.1	signal peptidase I	-
C8250_RS30340 (C8250_030355)	lepB	6763365..6764576 (+)	1212	WP_138356439.1	signal peptidase I	-
C8250_RS30345 (C8250_030360)	lepB	6764665..6765372 (+)	708	WP_232486039.1	signal peptidase I	-
C8250_RS30350 (C8250_030365)	lepB	6765438..6766169 (+)	732	WP_138356438.1	signal peptidase I	-
C8250_RS30355 (C8250_030370)	-	6766169..6766648 (+)	480	WP_138356497.1	NUDIX domain-containing protein	-
C8250_RS30360 (C8250_030375)	-	6766688..6767014 (+)	327	WP_138356437.1	DUF2469 domain-containing protein	-
C8250_RS30365 (C8250_030380)	-	6767132..6767491 (+)	360	WP_138356436.1	YraN family protein	-
C8250_RS30370 (C8250_030385)	comM	6767491..6769101 (+)	1611	WP_138356435.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
C8250_RS30375 (C8250_030390)	dprA	6769101..6770246 (+)	1146	WP_138356434.1	DNA-processing protein DprA	-
C8250_RS30380 (C8250_030395)	whiG	6770514..6771350 (+)	837	WP_138356433.1	RNA polymerase sigma factor WhiG	-
C8250_RS43775 (C8250_030400)	-	6771401..6771952 (+)	552	Protein_6072	helix-turn-helix domain-containing protein	-
C8250_RS30390 (C8250_030405)	-	6772095..6772748 (-)	654	Protein_6073	M23 family metallopeptidase	-
C8250_RS30395 (C8250_030410)	rpsB	6773022..6773966 (+)	945	WP_138356738.1	30S ribosomal protein S2	-

Sequence

Protein

Download Length: 536 a.a. Molecular weight: 56121.56 Da Isoelectric Point: 7.4426

                                >NTDB_id=370932 C8250_RS30370 WP_138356435.1 6767491..6769101(+) (comM) [Streptomyces sp. So13.3]

MGFARTCSVALVGVEGVVVEVQADLEPGLAAFTLVGLPDKSLSESRDRVRAAIVNSGETWPQKKLTVGLSPASVPKSGSG

FDLGVACAVLAANERLAPRAIADLMMIGELGLDGRVRPVRGVLPAVLAAADAGYRHVVVPERTAAEASLVPGVSVLGIRT

LRQLVAILNDETVPEEEEDRDEGRPDPLFAGLAVPGAGMGTGVSGREVVPDLADVAGQHTARRALEISAAGGHHLYLKGP

PGAGKTMLAERLAGLLPRLTAQESLEVTAVHSVAGILPPGKPLIDTPPYCAPHHSATMPSIIGGGSGLPRPGAVSLAHRG

VLFLDEAPEFSGRVLDAMRQPLESGHVVVARSAGVMRLPARFLLALAANPCPCGRYSLLGLGCDCSPAAVRRYQARLSGP

LLDRVDLRVQVEAVTRTELIEGASGAEPSARVADRVRLARERAAVRYAETPWRTNSEVPGHELRTRWQVGPAGLREAERD

MERGLLTARGLDRVLRVAWTIADLAGVERPGPREMAEALQLRTGVARGVPAVVGGG

Nucleotide

Download Length: 1611 bp

                                >NTDB_id=370932 C8250_RS30370 WP_138356435.1 6767491..6769101(+) (comM) [Streptomyces sp. So13.3]

ATGGGCTTCGCCCGCACCTGCTCGGTGGCCCTGGTCGGCGTGGAGGGCGTGGTCGTCGAGGTCCAGGCCGACCTCGAACC

GGGGCTGGCCGCGTTCACCCTCGTCGGACTGCCCGACAAGAGCCTGAGCGAGAGCCGCGACCGCGTCCGGGCGGCGATCG

TGAACAGCGGAGAGACCTGGCCGCAGAAGAAACTCACCGTGGGCCTCAGCCCCGCCTCGGTCCCCAAGAGCGGCAGCGGC

TTCGATCTCGGGGTCGCGTGCGCGGTCCTCGCCGCCAACGAACGGCTCGCGCCCCGGGCCATCGCCGATCTGATGATGAT

CGGCGAGCTGGGCCTCGACGGCCGGGTGCGGCCGGTCCGCGGAGTGCTGCCCGCCGTCCTCGCCGCGGCCGACGCCGGGT

ACCGGCACGTCGTGGTTCCGGAACGCACCGCGGCCGAGGCCTCGCTCGTTCCGGGAGTCTCGGTGCTCGGCATCCGTACC

CTGCGCCAGCTCGTCGCGATCCTCAACGACGAGACGGTCCCGGAAGAGGAGGAAGACCGGGACGAGGGGCGTCCCGACCC

GCTGTTCGCCGGGCTCGCGGTGCCCGGGGCCGGTATGGGCACCGGCGTCTCCGGCCGGGAGGTGGTCCCCGACCTCGCGG

ACGTCGCGGGCCAGCACACCGCCCGGCGTGCCCTGGAGATCTCCGCGGCCGGCGGCCATCACCTGTACCTGAAGGGCCCG

CCGGGCGCCGGAAAGACGATGCTGGCCGAGCGGCTGGCCGGGCTCCTGCCACGGCTCACCGCACAGGAGTCGCTGGAGGT

CACCGCGGTGCACTCGGTCGCCGGGATCCTCCCGCCCGGCAAACCGCTGATCGACACCCCGCCGTACTGCGCCCCGCACC

ACTCGGCGACCATGCCCTCCATCATCGGCGGCGGCAGCGGTCTGCCCAGGCCGGGCGCGGTCTCCCTGGCCCATCGCGGG

GTGCTCTTCCTGGACGAGGCGCCGGAGTTCAGCGGCCGGGTGCTCGACGCGATGCGCCAGCCGCTGGAGTCAGGGCACGT

CGTGGTGGCCCGCTCCGCGGGAGTGATGCGGCTGCCCGCGCGCTTCCTGCTCGCCCTCGCCGCGAACCCCTGTCCGTGCG

GACGGTATTCGCTGCTGGGGCTGGGGTGCGACTGCTCGCCGGCGGCGGTTCGCCGGTACCAGGCGAGACTGTCCGGGCCG

CTCCTGGACCGGGTGGACCTCCGCGTCCAGGTCGAGGCGGTGACCCGTACGGAGCTGATCGAGGGCGCCTCGGGCGCCGA

GCCGAGCGCGCGGGTCGCGGACCGGGTGCGGCTCGCGAGGGAACGGGCGGCGGTCCGGTACGCGGAGACCCCGTGGCGGA

CCAACAGCGAGGTGCCCGGCCATGAGCTGCGCACCCGCTGGCAGGTGGGCCCGGCCGGACTGCGGGAGGCCGAAAGGGAC

ATGGAGCGCGGACTGCTCACCGCCCGGGGCCTGGACCGCGTCCTGCGCGTGGCCTGGACGATCGCCGATCTCGCCGGGGT

CGAACGGCCCGGTCCGCGGGAGATGGCGGAGGCCCTGCAACTGCGCACCGGTGTCGCCCGCGGGGTGCCGGCCGTCGTGG

GCGGTGGCTGA

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-141)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(211-418)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(427-522)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comM	Vibrio campbellii strain DS40M4	40.152	98.507	0.396
comM	Haemophilus influenzae Rd KW20	39.279	98.321	0.386
comM	Vibrio cholerae O1 biovar El Tor strain E7946	39.655	97.388	0.386
comM	Vibrio cholerae strain A1552	39.655	97.388	0.386
comM	Acinetobacter baylyi ADP1	39.197	97.575	0.382
comM	Legionella pneumophila strain ERS1305867	38.068	98.507	0.375
comM	Legionella pneumophila str. Paris	38.068	98.507	0.375
comM	Glaesserella parasuis strain SC1401	37.951	98.321	0.373

Detailed information NTG0370932