Detailed information
Bioinformatically predicted
Overview
| Name | ruvB | Type | Machinery gene |
| Locus tag | HMPREF0772_RS08080 | Genome accession | NC_017342 |
| Coordinates | 1597459..1598463 (+) | Length | 334 a.a. |
| NCBI ID | WP_001005767.1 | Uniprot ID | Q6GG63 |
| Organism | Staphylococcus aureus subsp. aureus TCH60 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 1592459..1603463
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HMPREF0772_RS08045 (HMPREF0772_11494) | mreD | 1592946..1593476 (+) | 531 | WP_001259929.1 | rod shape-determining protein MreD | - |
| HMPREF0772_RS08050 (HMPREF0772_11495) | rplU | 1593769..1594077 (+) | 309 | WP_000457386.1 | 50S ribosomal protein L21 | - |
| HMPREF0772_RS08055 (HMPREF0772_11496) | - | 1594083..1594403 (+) | 321 | WP_000633692.1 | ribosomal-processing cysteine protease Prp | - |
| HMPREF0772_RS08060 (HMPREF0772_11497) | rpmA | 1594415..1594699 (+) | 285 | WP_000916187.1 | 50S ribosomal protein L27 | - |
| HMPREF0772_RS08065 (HMPREF0772_11498) | obgE | 1595051..1596343 (+) | 1293 | WP_000496098.1 | GTPase ObgE | - |
| HMPREF0772_RS08070 (HMPREF0772_11499) | - | 1596356..1596811 (+) | 456 | WP_000368902.1 | ACT domain-containing protein | - |
| HMPREF0772_RS08075 (HMPREF0772_11500) | ruvA | 1596825..1597427 (+) | 603 | WP_000271546.1 | Holliday junction branch migration protein RuvA | Machinery gene |
| HMPREF0772_RS08080 (HMPREF0772_11501) | ruvB | 1597459..1598463 (+) | 1005 | WP_001005767.1 | Holliday junction branch migration DNA helicase RuvB | Machinery gene |
| HMPREF0772_RS08085 (HMPREF0772_11502) | queA | 1598465..1599490 (+) | 1026 | WP_001019178.1 | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | - |
| HMPREF0772_RS08090 (HMPREF0772_11503) | tgt | 1599513..1600652 (+) | 1140 | WP_001112045.1 | tRNA guanosine(34) transglycosylase Tgt | - |
| HMPREF0772_RS08095 (HMPREF0772_11504) | yajC | 1600671..1600931 (+) | 261 | WP_001160682.1 | preprotein translocase subunit YajC | - |
Sequence
Protein
Download Length: 334 a.a. Molecular weight: 37718.00 Da Isoelectric Point: 5.0865
>NTDB_id=37091 HMPREF0772_RS08080 WP_001005767.1 1597459..1598463(+) (ruvB) [Staphylococcus aureus subsp. aureus TCH60]
MNERMVDQSMHSEETDFELSLRPTRLRQYIGQNSIKSNLEVFIKAAKLRHEPLDHVLLFGPPGLGKTTLSNIIANEMEVN
IRTVSGPSLERPGDLAAILSGLQPGDVLFIDEIHRLSSVVEEVLYPAMEDFFLDIIIGKGDEARSIRIDLPPFTLVGATT
RAGSLTGPLRDRFGVHLRLEYYNESDLKEIIIRTAEVLGTGIDEESAIELAKRSRGTPRVANRLLKRVRDFQQVNEDEQI
YIETTKHALGLLQVDQHGLDYIDHKMMNCIIKQYNGGPVGLDTIAVTIGEERITIEDVYEPFLIQKGFLERTPRGRKATP
LAYEHFAKSNEERE
MNERMVDQSMHSEETDFELSLRPTRLRQYIGQNSIKSNLEVFIKAAKLRHEPLDHVLLFGPPGLGKTTLSNIIANEMEVN
IRTVSGPSLERPGDLAAILSGLQPGDVLFIDEIHRLSSVVEEVLYPAMEDFFLDIIIGKGDEARSIRIDLPPFTLVGATT
RAGSLTGPLRDRFGVHLRLEYYNESDLKEIIIRTAEVLGTGIDEESAIELAKRSRGTPRVANRLLKRVRDFQQVNEDEQI
YIETTKHALGLLQVDQHGLDYIDHKMMNCIIKQYNGGPVGLDTIAVTIGEERITIEDVYEPFLIQKGFLERTPRGRKATP
LAYEHFAKSNEERE
Nucleotide
Download Length: 1005 bp
>NTDB_id=37091 HMPREF0772_RS08080 WP_001005767.1 1597459..1598463(+) (ruvB) [Staphylococcus aureus subsp. aureus TCH60]
ATGAATGAGCGTATGGTTGATCAATCAATGCATAGTGAAGAAACTGATTTCGAATTGTCGCTTAGACCTACGAGATTACG
ACAATATATTGGTCAAAATTCAATAAAAAGTAATTTAGAAGTATTTATTAAAGCGGCTAAACTTCGTCATGAACCATTAG
ATCATGTATTGCTTTTTGGCCCCCCTGGATTAGGTAAGACAACATTATCTAATATCATTGCCAATGAAATGGAAGTTAAT
ATACGTACAGTATCAGGGCCTTCATTAGAAAGACCTGGTGATTTGGCTGCAATTTTATCAGGGCTTCAACCTGGAGATGT
TTTGTTTATTGATGAAATACACAGACTGAGTAGTGTTGTTGAAGAAGTGCTATACCCTGCAATGGAAGATTTCTTTTTAG
ATATTATCATTGGTAAAGGCGATGAGGCTAGAAGTATCCGTATCGACTTACCTCCATTCACTTTGGTAGGTGCAACAACA
CGAGCTGGTAGCTTAACAGGTCCACTAAGGGATCGATTTGGTGTGCACTTAAGATTAGAATATTATAATGAATCAGATTT
AAAAGAAATCATTATTAGAACAGCTGAGGTTTTAGGCACAGGTATTGATGAAGAAAGTGCTATTGAACTTGCTAAACGTT
CTAGAGGGACTCCAAGAGTAGCCAATCGACTATTGAAACGGGTAAGAGACTTCCAGCAAGTGAATGAAGATGAACAAATA
TACATTGAAACAACAAAGCACGCATTAGGTTTACTTCAAGTTGATCAACACGGACTAGATTACATTGATCATAAAATGAT
GAACTGTATTATTAAGCAGTATAATGGTGGACCTGTTGGTTTAGATACGATTGCCGTAACAATTGGCGAAGAACGTATTA
CAATTGAGGACGTTTATGAGCCATTTCTTATTCAGAAAGGCTTTTTAGAACGTACGCCGCGTGGCAGAAAAGCAACACCA
TTAGCTTATGAACATTTTGCAAAGTCGAATGAGGAGAGAGAATAA
ATGAATGAGCGTATGGTTGATCAATCAATGCATAGTGAAGAAACTGATTTCGAATTGTCGCTTAGACCTACGAGATTACG
ACAATATATTGGTCAAAATTCAATAAAAAGTAATTTAGAAGTATTTATTAAAGCGGCTAAACTTCGTCATGAACCATTAG
ATCATGTATTGCTTTTTGGCCCCCCTGGATTAGGTAAGACAACATTATCTAATATCATTGCCAATGAAATGGAAGTTAAT
ATACGTACAGTATCAGGGCCTTCATTAGAAAGACCTGGTGATTTGGCTGCAATTTTATCAGGGCTTCAACCTGGAGATGT
TTTGTTTATTGATGAAATACACAGACTGAGTAGTGTTGTTGAAGAAGTGCTATACCCTGCAATGGAAGATTTCTTTTTAG
ATATTATCATTGGTAAAGGCGATGAGGCTAGAAGTATCCGTATCGACTTACCTCCATTCACTTTGGTAGGTGCAACAACA
CGAGCTGGTAGCTTAACAGGTCCACTAAGGGATCGATTTGGTGTGCACTTAAGATTAGAATATTATAATGAATCAGATTT
AAAAGAAATCATTATTAGAACAGCTGAGGTTTTAGGCACAGGTATTGATGAAGAAAGTGCTATTGAACTTGCTAAACGTT
CTAGAGGGACTCCAAGAGTAGCCAATCGACTATTGAAACGGGTAAGAGACTTCCAGCAAGTGAATGAAGATGAACAAATA
TACATTGAAACAACAAAGCACGCATTAGGTTTACTTCAAGTTGATCAACACGGACTAGATTACATTGATCATAAAATGAT
GAACTGTATTATTAAGCAGTATAATGGTGGACCTGTTGGTTTAGATACGATTGCCGTAACAATTGGCGAAGAACGTATTA
CAATTGAGGACGTTTATGAGCCATTTCTTATTCAGAAAGGCTTTTTAGAACGTACGCCGCGTGGCAGAAAAGCAACACCA
TTAGCTTATGAACATTTTGCAAAGTCGAATGAGGAGAGAGAATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvB | Bacillus subtilis subsp. subtilis str. 168 |
65.951 |
97.605 |
0.644 |
| ruvB | Streptococcus pneumoniae TIGR4 |
58.182 |
98.802 |
0.575 |
| ruvB | Streptococcus pneumoniae R6 |
57.879 |
98.802 |
0.572 |
| ruvB | Streptococcus pneumoniae D39 |
57.879 |
98.802 |
0.572 |
| ruvB | Helicobacter pylori 26695 |
56.481 |
97.006 |
0.548 |
| ruvB | Synechocystis sp. PCC 6803 |
53.75 |
95.808 |
0.515 |