Detailed information NTG0037090

Bioinformatically predicted

Overview

• Name: ruvA
• Type: Machinery gene
• Locus tag: HMPREF0772_RS08075
• Genome accession: NC_017342
• Coordinates: 1596825..1597427 (+)
• Length: 200 a.a.
• NCBI ID: WP_000271546.1
• Uniprot ID: Q6GG62
• Organism: Staphylococcus aureus subsp. aureus TCH60
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1591825..1602427

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HMPREF0772_RS08040 (HMPREF0772_11493)	mreC	1592104..1592946 (+)	843	WP_000911041.1	rod shape-determining protein MreC	-
HMPREF0772_RS08045 (HMPREF0772_11494)	mreD	1592946..1593476 (+)	531	WP_001259929.1	rod shape-determining protein MreD	-
HMPREF0772_RS08050 (HMPREF0772_11495)	rplU	1593769..1594077 (+)	309	WP_000457386.1	50S ribosomal protein L21	-
HMPREF0772_RS08055 (HMPREF0772_11496)	-	1594083..1594403 (+)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
HMPREF0772_RS08060 (HMPREF0772_11497)	rpmA	1594415..1594699 (+)	285	WP_000916187.1	50S ribosomal protein L27	-
HMPREF0772_RS08065 (HMPREF0772_11498)	obgE	1595051..1596343 (+)	1293	WP_000496098.1	GTPase ObgE	-
HMPREF0772_RS08070 (HMPREF0772_11499)	-	1596356..1596811 (+)	456	WP_000368902.1	ACT domain-containing protein	-
HMPREF0772_RS08075 (HMPREF0772_11500)	ruvA	1596825..1597427 (+)	603	WP_000271546.1	Holliday junction branch migration protein RuvA	Machinery gene
HMPREF0772_RS08080 (HMPREF0772_11501)	ruvB	1597459..1598463 (+)	1005	WP_001005767.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
HMPREF0772_RS08085 (HMPREF0772_11502)	queA	1598465..1599490 (+)	1026	WP_001019178.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
HMPREF0772_RS08090 (HMPREF0772_11503)	tgt	1599513..1600652 (+)	1140	WP_001112045.1	tRNA guanosine(34) transglycosylase Tgt	-
HMPREF0772_RS08095 (HMPREF0772_11504)	yajC	1600671..1600931 (+)	261	WP_001160682.1	preprotein translocase subunit YajC	-

Sequence

Protein

• Length: 200 a.a.
• Molecular weight: 22292.44 Da
• Isoelectric Point: 5.6716

>NTDB_id=37090 HMPREF0772_RS08075 WP_000271546.1 1596825..1597427(+) (ruvA) [Staphylococcus aureus subsp. aureus TCH60]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTEQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide

• Length: 603 bp

>NTDB_id=37090 HMPREF0772_RS08075 WP_000271546.1 1596825..1597427(+) (ruvA) [Staphylococcus aureus subsp. aureus TCH60]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTCACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACACCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATCA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACATCGACGGAGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

• Helix-hairpin-helix domain (HHH_5) (71-128)

• RuvA, C-terminal domain (RuvA_C) (156-197)

• RuvA N terminal domain (RuvA_N) (1-61)

3D structure

• AlphaFold DB: Q6GG62

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvA	Streptococcus pneumoniae TIGR4	46.231	99.5	0.46
ruvA	Streptococcus pneumoniae R6	45.729	99.5	0.455
ruvA	Streptococcus pneumoniae D39	45.729	99.5	0.455
ruvA	Bacillus subtilis subsp. subtilis str. 168	42.714	99.5	0.425