Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   FKV23_RS00900 Genome accession   NZ_CP041242
Coordinates   200726..202237 (-) Length   503 a.a.
NCBI ID   WP_141622170.1    Uniprot ID   A0A514BN75
Organism   Marilutibacter alkalisoli strain SJ-36     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 195726..207237
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FKV23_RS00875 (FKV23_00875) ubiB 196199..197887 (+) 1689 WP_141622166.1 ubiquinone biosynthesis regulatory protein kinase UbiB -
  FKV23_RS00880 (FKV23_00880) - 197872..198582 (+) 711 WP_141622167.1 pseudouridine synthase -
  FKV23_RS00885 (FKV23_00885) arfB 198904..199323 (+) 420 WP_141622168.1 alternative ribosome rescue aminoacyl-tRNA hydrolase ArfB -
  FKV23_RS00890 (FKV23_00890) - 199536..200096 (+) 561 WP_141624967.1 lysophospholipid acyltransferase family protein -
  FKV23_RS00895 (FKV23_00895) yiaA 200236..200694 (+) 459 WP_141622169.1 inner membrane protein YiaA -
  FKV23_RS00900 (FKV23_00900) comM 200726..202237 (-) 1512 WP_141622170.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  FKV23_RS00905 (FKV23_00905) - 202251..202541 (-) 291 WP_141622171.1 ubiquinone biosynthesis accessory factor UbiK -
  FKV23_RS00910 (FKV23_00910) - 202759..203097 (+) 339 WP_141622172.1 P-II family nitrogen regulator -
  FKV23_RS17625 (FKV23_00915) - 203150..204313 (+) 1164 WP_141622173.1 SGNH/GDSL hydrolase family protein -
  FKV23_RS00920 (FKV23_00920) speE 204362..205213 (-) 852 WP_141622174.1 polyamine aminopropyltransferase -

Sequence

Protein


Download         Length: 503 a.a.        Molecular weight: 53028.79 Da        Isoelectric Point: 8.0841

>NTDB_id=370762 FKV23_RS00900 WP_141622170.1 200726..202237(-) (comM) [Marilutibacter alkalisoli strain SJ-36]
MNLALVHGRARSGVRAPEVRVEVHLAGGLPAMSIVGLPAAAVRESKDRVRAAIRCAQFEFPARRITINLAPADLPKDGGR
FDLPIALGILAASGQIPLEPLTEYEFLGELALTGELRAVDGVLPAALAAAGAGRKLVVPACNGAEAALSSRVEAYTARTL
LEVCAMLQGRKPLPAATAPPATHESGPDLTDVRGQAHARRALEIAAAGGHHLLLVGPPGCGKTLLASRLPGLLPEASEDE
ALEAAAVASVSGRGLDPTRWRQRGYRSPHHTASAIALIGGGSEPRPGEVSLAHQGVLFLDELPEWSRHALEVLREPLESG
VVTVSRAARSAEFPARFQLVAAMNPCPCGYAGDASGRCNCSPEMINRYRGRVSGPLMDRIDLHVHVPRLPPAELRLDGPP
GESTAAVRERVIAARTTQLDRTGGPNARLGEAEMRAFCRLTDADQALLERAVESLRLSARSMHRILRVARTIADLAGSDA
IATAHLTEAIGYRRMDAKADAGA

Nucleotide


Download         Length: 1512 bp        

>NTDB_id=370762 FKV23_RS00900 WP_141622170.1 200726..202237(-) (comM) [Marilutibacter alkalisoli strain SJ-36]
ATGAACCTGGCCCTCGTGCACGGACGTGCGCGGTCCGGGGTGCGTGCGCCGGAAGTACGGGTGGAGGTGCACCTGGCCGG
CGGCCTGCCCGCGATGTCGATCGTCGGCCTGCCGGCTGCGGCGGTACGCGAATCCAAGGACCGTGTGCGTGCCGCCATCC
GCTGCGCGCAGTTCGAGTTCCCGGCGCGGCGGATCACCATCAACCTCGCCCCGGCCGACCTGCCCAAGGACGGTGGCCGC
TTCGACCTGCCGATCGCGCTCGGCATCCTCGCCGCCAGCGGACAGATTCCGCTGGAACCGCTGACCGAATACGAATTCCT
TGGCGAACTCGCCCTCACCGGTGAACTGCGCGCGGTCGACGGCGTGCTGCCGGCCGCATTGGCCGCCGCCGGGGCCGGCC
GCAAGCTGGTGGTGCCGGCCTGCAACGGCGCCGAGGCGGCGCTGTCGAGCCGGGTCGAGGCGTATACCGCGCGCACCCTG
CTGGAGGTGTGCGCGATGCTGCAGGGGCGCAAGCCGCTGCCTGCCGCGACCGCCCCACCGGCCACGCATGAATCCGGCCC
CGACCTGACCGATGTACGCGGTCAGGCGCATGCCCGCCGGGCGCTGGAGATCGCCGCAGCCGGCGGCCACCATCTACTGC
TGGTCGGCCCGCCGGGCTGCGGCAAGACCCTGCTCGCCTCGCGCCTGCCCGGGCTGCTGCCCGAGGCCAGCGAAGATGAA
GCACTGGAAGCAGCGGCGGTGGCCTCGGTCAGTGGCCGCGGCCTCGACCCGACACGTTGGCGCCAGCGCGGATACCGCTC
ACCGCACCATACCGCCAGCGCCATCGCCCTGATCGGCGGCGGCAGCGAACCGCGTCCGGGCGAGGTCTCGCTCGCTCATC
AGGGCGTGCTGTTCCTGGACGAACTGCCCGAGTGGAGCCGCCACGCCCTCGAAGTACTGCGCGAACCTCTGGAATCGGGC
GTGGTCACCGTCTCGCGGGCCGCGCGCAGCGCCGAGTTCCCGGCCCGCTTCCAGCTGGTCGCGGCGATGAACCCCTGCCC
CTGCGGCTACGCCGGCGACGCCAGCGGTCGCTGCAACTGCAGCCCGGAAATGATCAACCGCTATCGCGGCCGCGTGTCCG
GCCCGCTGATGGACCGGATCGACCTGCACGTGCATGTGCCACGATTGCCGCCCGCGGAACTGCGCCTCGACGGACCGCCC
GGAGAATCCACTGCCGCGGTCCGCGAGCGCGTCATCGCCGCCCGCACGACCCAGCTCGATCGCACCGGCGGGCCCAATGC
CCGCCTCGGCGAAGCGGAAATGCGCGCGTTCTGCAGACTGACCGACGCCGACCAGGCCCTGCTCGAACGCGCGGTCGAAT
CGCTGCGCCTCAGCGCCCGCTCGATGCACCGCATCCTGCGCGTGGCCCGGACCATCGCCGATCTTGCCGGCAGCGACGCC
ATCGCCACCGCCCACCTCACCGAAGCGATCGGTTACCGGCGGATGGATGCGAAGGCGGATGCTGGCGCATGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A514BN75

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

56.024

99.006

0.555
  comM Vibrio cholerae strain A1552

55.422

99.006

0.549
  comM Glaesserella parasuis strain SC1401

53.785

99.801

0.537
  comM Haemophilus influenzae Rd KW20

53.892

99.602

0.537
  comM Legionella pneumophila str. Paris

49.296

98.807

0.487
  comM Legionella pneumophila strain ERS1305867

49.296

98.807

0.487
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.488

100

0.449

Multiple sequence alignment