Detailed information NTG0370281

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: FJQ89_RS22300
• Genome accession: NZ_CP041185
• Coordinates: 5077342..5078481 (-)
• Length: 379 a.a.
• NCBI ID: WP_205704519.1
• Uniprot ID: -
• Organism: Janthinobacterium tructae strain SNU WT1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5072342..5083481

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FJQ89_RS22285 (FJQ89_22285)	glcF	5073338..5074567 (+)	1230	WP_141171741.1	glycolate oxidase subunit GlcF	-
FJQ89_RS22290 (FJQ89_22290)	-	5074560..5076671 (-)	2112	WP_141171742.1	EAL domain-containing protein	-
FJQ89_RS22295 (FJQ89_22295)	-	5076855..5077340 (-)	486	WP_141171743.1	glutathione peroxidase	-
FJQ89_RS22300 (FJQ89_22300)	pilU	5077342..5078481 (-)	1140	WP_205704519.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
FJQ89_RS22305 (FJQ89_22305)	pilT	5078486..5079529 (-)	1044	WP_141171744.1	type IV pilus twitching motility protein PilT	Machinery gene
FJQ89_RS22310 (FJQ89_22310)	-	5079600..5080304 (+)	705	WP_141171745.1	YggS family pyridoxal phosphate-dependent enzyme	-
FJQ89_RS22315 (FJQ89_22315)	proC	5080323..5081153 (+)	831	WP_141171746.1	pyrroline-5-carboxylate reductase	-
FJQ89_RS22320 (FJQ89_22320)	-	5081178..5081894 (-)	717	WP_141171747.1	anti-sigma factor	-
FJQ89_RS22325 (FJQ89_22325)	-	5081891..5082448 (-)	558	WP_141171748.1	sigma-70 family RNA polymerase sigma factor	-
FJQ89_RS22330 (FJQ89_22330)	-	5082555..5083112 (-)	558	WP_141171749.1	DUF3455 domain-containing protein	-

Sequence

Protein

• Length: 379 a.a.
• Molecular weight: 41074.21 Da
• Isoelectric Point: 6.8671

>NTDB_id=370281 FJQ89_RS22300 WP_205704519.1 5077342..5078481(-) (pilU) [Janthinobacterium tructae strain SNU WT1]
MQTTHEYYGAMHALLAQMRARGGSDLFITAGFPPAIKLDGKLTPLAGAALDAQQAAGYVRAVMNERQAAEFASSREANFA
ISPDGLGRFRVSAFVQMGQAGMVLRLINTAIPTLDGLGLPAILQDIVMSKRGLVIMVGATGCGKSTTLAAMVGHRNAHSH
GHIITIEDPVEFIHPHGNCIVTQREVGVDTDDWATALKNTLRQAPDVIQIGEIRDRDTMDHAIAFAETGHLCLATLHANN
ANQALDRIINFFPEERRQQLLMDLSLNLKGMISQRLIPNKDGGGRKAALEILLNSPLMSDLIFKGQVHEIKELMKKSREH
GMQTFDQALFDLHEAGAISYEDALRNADSVNDLRLTIKLKGATAPEPPPQTGTAKLGLL

Nucleotide

• Length: 1140 bp

>NTDB_id=370281 FJQ89_RS22300 WP_205704519.1 5077342..5078481(-) (pilU) [Janthinobacterium tructae strain SNU WT1]
ATGCAGACGACGCACGAATACTATGGCGCCATGCACGCGCTGCTGGCGCAGATGCGCGCACGGGGCGGCTCCGACCTGTT
CATCACGGCCGGCTTTCCGCCCGCCATCAAGCTCGACGGCAAGCTGACGCCGCTGGCGGGCGCCGCGCTCGATGCGCAGC
AGGCGGCCGGCTACGTGCGCGCCGTCATGAACGAACGCCAGGCGGCCGAATTCGCGTCCAGCCGCGAAGCCAATTTCGCC
ATCAGCCCGGACGGCCTCGGGCGTTTCCGCGTGTCCGCCTTCGTGCAGATGGGTCAGGCAGGCATGGTCTTGCGATTGAT
CAATACCGCCATCCCCACGCTGGACGGACTGGGCTTACCGGCCATTCTGCAAGACATCGTGATGAGCAAGCGGGGCCTCG
TCATCATGGTGGGCGCCACGGGCTGCGGCAAGTCGACCACGCTGGCGGCCATGGTGGGCCACCGCAACGCGCACAGCCAC
GGCCACATCATCACCATCGAAGATCCCGTGGAATTCATCCATCCGCACGGCAACTGCATCGTCACCCAGCGCGAGGTGGG
CGTCGATACGGACGACTGGGCCACGGCCCTGAAAAACACCCTGCGCCAGGCGCCCGACGTGATCCAGATCGGCGAAATCC
GCGACCGCGACACCATGGACCACGCCATCGCATTCGCCGAGACGGGCCATCTGTGCCTAGCGACCCTGCACGCGAACAAC
GCCAACCAGGCGCTGGACCGCATCATCAATTTCTTCCCCGAAGAGCGGCGCCAGCAGCTGCTGATGGATCTGTCACTCAA
TTTGAAGGGCATGATTTCGCAGCGGCTGATCCCCAACAAGGACGGCGGCGGACGCAAGGCGGCGCTGGAAATCCTGCTCA
ATTCGCCGCTGATGAGCGATCTGATCTTCAAGGGCCAGGTGCACGAGATCAAGGAGCTGATGAAAAAATCGCGCGAGCAT
GGCATGCAGACGTTCGACCAAGCCCTGTTCGACCTGCACGAAGCAGGCGCCATCAGCTACGAAGACGCGCTGCGCAATGC
GGACTCCGTCAACGACCTGCGCCTGACGATCAAGCTCAAGGGCGCAACGGCGCCGGAACCGCCCCCGCAAACGGGCACCG
CCAAACTGGGACTGCTCTGA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (62-278)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	63.739	93.14	0.594
pilU	Acinetobacter baylyi ADP1	59.942	91.557	0.549
pilU	Vibrio cholerae strain A1552	56.851	90.501	0.515
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	43.731	86.28	0.377