Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   FJQ89_RS21645 Genome accession   NZ_CP041185
Coordinates   4930021..4931541 (-) Length   506 a.a.
NCBI ID   WP_141171652.1    Uniprot ID   A0A4Y6RJV7
Organism   Janthinobacterium tructae strain SNU WT1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4925021..4936541
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FJQ89_RS21635 (FJQ89_21635) - 4928886..4929230 (-) 345 WP_141171650.1 DUF1840 domain-containing protein -
  FJQ89_RS21640 (FJQ89_21640) - 4929411..4929956 (-) 546 WP_141171651.1 hypothetical protein -
  FJQ89_RS21645 (FJQ89_21645) comM 4930021..4931541 (-) 1521 WP_141171652.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  FJQ89_RS21650 (FJQ89_21650) - 4931653..4931901 (-) 249 WP_035824443.1 accessory factor UbiK family protein -
  FJQ89_RS21655 (FJQ89_21655) - 4932172..4932939 (+) 768 WP_141171653.1 TorF family putative porin -
  FJQ89_RS21660 (FJQ89_21660) - 4932951..4933289 (+) 339 WP_010393464.1 P-II family nitrogen regulator -
  FJQ89_RS21665 (FJQ89_21665) amt 4933301..4934836 (+) 1536 WP_141171654.1 ammonium transporter -
  FJQ89_RS21670 (FJQ89_21670) gshA 4935041..4936339 (+) 1299 WP_071079543.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54375.44 Da        Isoelectric Point: 8.9188

>NTDB_id=370279 FJQ89_RS21645 WP_141171652.1 4930021..4931541(-) (comM) [Janthinobacterium tructae strain SNU WT1]
MSLAVLKSRALAGMEAPEVSVEVHLANGLPSFTIVGLPDTEVKESRDRVRAALQNCGFEMPARRITANLAPADLPKESGR
FDLPIALGILAASGQLPGNQLHHYEFAGELSLSGQLRPIRGALAMTFAMQRSQSGTPRAFILPQANADEAALVSDACIYP
AHSLLEVCAHFAAPASQMALQRHQPVLAAQVFAYPDFADVQGQQQARRALEVAAAGGHNVLMVGPPGAGKTMLASRFPGV
LPPMSDAEALESAAVHSLGGHFKVEHWKRRPYRAPHQTASGVAPVGGGNLPRPGEISLAHCGVLFLDEIAEFQRRVLDVL
RQPMESGVISISRAARQAEFPARFQLIAAMNPCPCGYLGHASGRCRCTPDAVLRYRSRLSGPLLDRIDLQIEVAAMPAAA
LGRHAGAGESTQSIATRVAAAFALQLARQGKANQRLSSTEIEQHCRLEPHGEQLLHGAMARLHWSARTYHRVLRVARSIA
DLASSPTITQPHVAEAIQYRRVLREM

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=370279 FJQ89_RS21645 WP_141171652.1 4930021..4931541(-) (comM) [Janthinobacterium tructae strain SNU WT1]
ATGAGTCTGGCCGTCCTGAAAAGCCGCGCCCTGGCCGGCATGGAGGCACCCGAGGTAAGTGTCGAAGTCCACCTTGCCAA
TGGCTTGCCCTCGTTTACGATAGTCGGCCTGCCGGATACGGAAGTGAAGGAATCGCGCGACCGCGTCCGCGCTGCGCTGC
AAAACTGCGGCTTTGAAATGCCGGCGCGGCGCATCACAGCCAATCTGGCGCCTGCGGACCTGCCCAAGGAATCGGGCCGC
TTCGACTTGCCCATTGCGCTGGGCATCCTGGCCGCCTCCGGCCAATTGCCGGGCAACCAACTACACCACTACGAATTCGC
GGGCGAACTGTCACTGTCGGGCCAGCTACGCCCCATCCGCGGTGCGCTGGCCATGACTTTTGCCATGCAGCGCAGCCAAT
CGGGCACACCACGCGCCTTCATCCTGCCGCAAGCGAACGCGGACGAGGCGGCGCTGGTCAGCGATGCCTGCATCTATCCC
GCCCACAGCCTGCTCGAGGTCTGCGCGCATTTTGCCGCGCCCGCCAGCCAGATGGCCCTGCAACGCCATCAACCCGTGCT
GGCAGCGCAGGTTTTTGCGTATCCCGACTTTGCCGATGTACAGGGCCAGCAGCAGGCGCGACGCGCACTGGAAGTGGCGG
CCGCGGGCGGCCACAACGTGCTGATGGTGGGACCGCCGGGTGCGGGCAAGACCATGCTGGCCAGCCGGTTTCCCGGCGTG
CTGCCGCCCATGAGCGATGCAGAGGCACTGGAATCGGCCGCCGTACATTCGCTGGGCGGCCACTTCAAGGTGGAACACTG
GAAACGCCGTCCCTATCGTGCCCCGCACCAGACGGCGTCCGGCGTGGCCCCGGTGGGCGGCGGCAACCTGCCGCGCCCGG
GAGAAATCTCGCTGGCACACTGCGGTGTGTTGTTTCTCGATGAAATCGCCGAATTCCAGCGCCGGGTCCTCGATGTCTTG
CGCCAACCCATGGAATCGGGCGTCATCAGCATTTCGCGTGCGGCCCGCCAGGCCGAGTTTCCTGCCCGCTTTCAGTTGAT
CGCCGCCATGAATCCCTGCCCGTGCGGCTACCTGGGGCATGCTTCCGGCCGTTGCCGCTGCACGCCGGACGCCGTGCTGC
GCTATCGCAGTCGCCTGTCCGGCCCGCTGCTCGACCGTATCGACCTGCAAATCGAAGTTGCCGCCATGCCAGCGGCGGCG
CTGGGGCGGCACGCAGGCGCCGGCGAAAGCACGCAATCCATCGCCACGCGGGTAGCGGCAGCCTTCGCCCTGCAGCTGGC
ACGCCAGGGGAAAGCGAACCAGCGCCTGAGCAGCACGGAAATCGAACAGCATTGTCGCCTGGAGCCACATGGCGAACAGT
TGTTGCATGGCGCCATGGCGCGCCTGCACTGGTCGGCACGCACCTACCACCGGGTACTGCGCGTGGCGCGCAGCATCGCC
GACCTGGCAAGCAGCCCCACGATCACGCAGCCGCATGTCGCCGAAGCGATCCAGTACCGGCGCGTACTGCGTGAAATGTA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(196-398)

Subunit ChlI of Mg-chelatase (ChlI)

(21-146)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(408-500)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Y6RJV7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

53.229

100

0.538
  comM Vibrio cholerae strain A1552

53.333

100

0.538
  comM Glaesserella parasuis strain SC1401

51.969

100

0.522
  comM Haemophilus influenzae Rd KW20

51.181

100

0.514
  comM Legionella pneumophila str. Paris

49.209

100

0.492
  comM Legionella pneumophila strain ERS1305867

49.209

100

0.492
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.071

100

0.441

Multiple sequence alignment