Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   FGA12_RS01325 Genome accession   NZ_CP041153
Coordinates   262982..264502 (-) Length   506 a.a.
NCBI ID   WP_033540567.1    Uniprot ID   -
Organism   Shewanella marisflavi strain ECSMB14101     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 257982..269502
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGA12_RS01300 (FGA12_01300) - 258307..259404 (+) 1098 WP_033540572.1 branched-chain amino acid aminotransferase -
  FGA12_RS01305 (FGA12_01305) - 259457..259876 (-) 420 WP_033540571.1 hypothetical protein -
  FGA12_RS01310 (FGA12_01310) - 260100..260792 (-) 693 WP_052125879.1 GntR family transcriptional regulator -
  FGA12_RS01315 (FGA12_01315) - 261013..261960 (-) 948 WP_033540569.1 acyltransferase -
  FGA12_RS01320 (FGA12_01320) - 261985..262869 (-) 885 WP_033540568.1 acyltransferase -
  FGA12_RS01325 (FGA12_01325) comM 262982..264502 (-) 1521 WP_033540567.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  FGA12_RS01330 (FGA12_01330) - 264828..266159 (+) 1332 WP_033540576.1 hemolysin family protein -
  FGA12_RS01335 (FGA12_01335) - 266156..266989 (-) 834 WP_052125878.1 GGDEF domain-containing protein -
  FGA12_RS01340 (FGA12_01340) - 267174..267980 (-) 807 WP_235363958.1 ABC transporter substrate-binding protein -
  FGA12_RS01345 (FGA12_01345) ilvY 268050..268934 (-) 885 WP_033540565.1 HTH-type transcriptional activator IlvY -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55049.80 Da        Isoelectric Point: 7.6141

>NTDB_id=369939 FGA12_RS01325 WP_033540567.1 262982..264502(-) (comM) [Shewanella marisflavi strain ECSMB14101]
MAIACVTTRASLGVAAPEVTVEVHLSNGLPAFNLVGLPETSVKEAKERVRSALINAGFEFPQRRITVNLAPADLPKQGGR
YDLPIAIGILAASKQVPDTHLSDHEFIGELALSGHIRACPGLLPAIIDARKQDKTLVLPLENRDDAELVGYQKSHFAAHL
QGLSEYLHGQGSLPGLSQDLHWIDSTPRAPGKCLSDVIGQYQAKRALEIAAAGNHNLLFLGPPGTGKTMLASRMMQLLPP
LDYDEALEVAAIHSVAGQSIPKEQFYQRPFRSPHHTSSAISLVGGGSHPKPGEISLAHRGVLFLDEVAEFPRKVLDCLRE
PMETGEVVISRAAAKLTFASRFQLIAAMNPSPCGDSANARATSDQIQRYLSRLSGPFIDRFDLTIEVPRLPQGTLTTSQQ
GEPSQVVAQRVHQARERQLCRAGVLNAELTGTQLTQTAGISQRDLEFLEQSVNQLGLSVRSYHRLQRVARTIADLEQSET
VARHHIAQALGYRAMDRLLNSLKNPY

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=369939 FGA12_RS01325 WP_033540567.1 262982..264502(-) (comM) [Shewanella marisflavi strain ECSMB14101]
ATGGCCATAGCCTGCGTCACCACGCGCGCCAGTTTGGGCGTGGCAGCCCCCGAAGTCACAGTGGAAGTGCACCTCAGTAA
TGGGCTACCCGCCTTCAACTTAGTGGGCCTTCCCGAGACCTCGGTAAAAGAGGCCAAGGAGCGGGTGCGCAGCGCCCTAA
TCAACGCCGGGTTTGAGTTTCCTCAACGCAGAATAACGGTCAATCTGGCGCCAGCCGACCTCCCCAAACAGGGGGGCCGC
TATGATCTGCCCATCGCCATCGGCATACTGGCCGCCTCCAAGCAAGTGCCAGACACCCACTTAAGCGATCACGAATTTAT
CGGTGAACTTGCCTTATCGGGCCATATACGTGCCTGCCCCGGCCTATTGCCGGCGATCATCGATGCGCGCAAACAGGACA
AAACCTTAGTGCTTCCCCTGGAAAATCGCGACGATGCCGAGCTGGTGGGTTATCAGAAAAGCCATTTTGCCGCACACCTA
CAAGGGCTCAGCGAATACCTGCACGGACAAGGCTCACTTCCCGGCCTCAGCCAAGATCTGCACTGGATAGATTCAACTCC
CAGGGCGCCAGGCAAATGCTTAAGTGATGTGATCGGCCAGTACCAGGCAAAACGCGCCCTGGAAATCGCCGCTGCTGGCA
ATCATAATCTGTTGTTTCTAGGGCCACCCGGCACGGGGAAAACCATGCTTGCCAGTCGCATGATGCAGTTGCTGCCGCCA
TTGGATTACGACGAAGCGTTAGAAGTTGCCGCCATTCATTCGGTCGCCGGGCAGAGTATCCCTAAGGAGCAATTTTACCA
ACGGCCTTTTCGAAGCCCTCATCACACGAGTTCAGCCATCTCACTGGTGGGCGGCGGCAGCCATCCTAAACCCGGTGAGA
TCTCCCTGGCCCACAGGGGCGTGTTGTTTCTCGACGAGGTGGCCGAATTTCCCCGTAAGGTGCTCGATTGCCTGCGTGAA
CCCATGGAGACGGGTGAAGTGGTGATCTCCCGCGCCGCCGCCAAACTGACCTTCGCCAGCCGTTTTCAGCTGATCGCCGC
CATGAACCCCAGCCCCTGCGGTGACAGCGCAAACGCCAGAGCAACAAGCGATCAAATACAGCGCTATCTGTCACGGCTCT
CCGGCCCCTTTATTGACCGTTTCGATCTCACCATAGAGGTACCACGCCTCCCCCAAGGCACGCTCACCACTAGCCAACAG
GGCGAGCCAAGCCAGGTTGTCGCCCAAAGGGTACATCAAGCCAGGGAGCGTCAACTGTGCCGCGCAGGCGTACTCAACGC
TGAACTCACCGGCACGCAGCTCACACAAACGGCAGGGATCAGTCAAAGGGATCTCGAGTTTCTCGAGCAGAGTGTCAATC
AACTGGGGTTATCTGTTCGCAGCTATCACAGGTTGCAACGCGTCGCCCGTACCATAGCGGATCTGGAACAAAGCGAAACT
GTCGCCCGCCACCATATCGCCCAGGCACTTGGCTATCGCGCCATGGATAGACTGCTTAATAGCTTGAAGAATCCCTATTA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-393)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

57.171

100

0.575
  comM Haemophilus influenzae Rd KW20

55.49

100

0.559
  comM Vibrio campbellii strain DS40M4

55.424

100

0.555
  comM Glaesserella parasuis strain SC1401

54.043

100

0.541
  comM Legionella pneumophila str. Paris

47.244

100

0.474
  comM Legionella pneumophila strain ERS1305867

47.244

100

0.474
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.685

98.617

0.421

Multiple sequence alignment