Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FJQ87_RS17685 Genome accession   NZ_CP041151
Coordinates   3936450..3937130 (-) Length   226 a.a.
NCBI ID   WP_140933763.1    Uniprot ID   A0A4Y6IFU6
Organism   Shewanella sp. SNU WT4 strain SNU WT1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3931450..3942130
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FJQ87_RS17660 (FJQ87_17660) yedF 3932548..3932790 (-) 243 WP_140933759.1 sulfurtransferase-like selenium metabolism protein YedF -
  FJQ87_RS17665 (FJQ87_17665) yedE 3932933..3934192 (-) 1260 WP_140933760.1 selenium metabolism membrane protein YedE/FdhT -
  FJQ87_RS17670 (FJQ87_17670) - 3934683..3935252 (+) 570 WP_140934194.1 DUF502 domain-containing protein -
  FJQ87_RS17675 (FJQ87_17675) - 3935405..3935815 (+) 411 WP_140933761.1 DUF1801 domain-containing protein -
  FJQ87_RS17680 (FJQ87_17680) - 3935941..3936312 (+) 372 WP_140933762.1 hypothetical protein -
  FJQ87_RS17685 (FJQ87_17685) ssb 3936450..3937130 (-) 681 WP_140933763.1 single-stranded DNA-binding protein Machinery gene
  FJQ87_RS17690 (FJQ87_17690) - 3937162..3938529 (-) 1368 WP_140933764.1 MFS transporter -
  FJQ87_RS17695 (FJQ87_17695) uvrA 3938778..3941603 (+) 2826 WP_140933765.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 24831.15 Da        Isoelectric Point: 5.2439

>NTDB_id=369937 FJQ87_RS17685 WP_140933763.1 3936450..3937130(-) (ssb) [Shewanella sp. SNU WT4 strain SNU WT1]
MASRGVNKVILVGNLGQDPEVRYMPNGNAVANITVATSESWKDQQGQQQERTEWHRVVFFGKLAEIAGEYLRKGSQVYVE
GKLQTRKWKDQSGQDRYSTEIVVDQSGSMQMLGGRPQGQPGQAAGNFGGQNNQFAGQPANQGYQQPQQNYQAPQQSAPQQ
AYQQPQQNYQSAPAAPAYQAPQQSAPQQSAPMQQRPAPKPQAAPAAAPQQNYTPDLDEGWDDDIPF

Nucleotide


Download         Length: 681 bp        

>NTDB_id=369937 FJQ87_RS17685 WP_140933763.1 3936450..3937130(-) (ssb) [Shewanella sp. SNU WT4 strain SNU WT1]
ATGGCCAGTCGCGGTGTGAATAAAGTGATTCTGGTAGGTAATTTAGGACAAGATCCTGAAGTGCGCTACATGCCAAATGG
CAATGCAGTGGCCAACATCACAGTGGCCACTAGTGAATCGTGGAAAGATCAGCAAGGACAGCAGCAAGAAAGAACTGAAT
GGCACCGTGTGGTGTTTTTCGGCAAGTTAGCTGAAATTGCCGGTGAATACCTGCGCAAAGGTTCGCAAGTCTACGTGGAA
GGCAAGCTGCAGACTCGCAAGTGGAAAGACCAAAGTGGTCAAGACAGATATTCTACTGAAATCGTGGTAGATCAAAGCGG
TAGCATGCAAATGCTGGGTGGCCGTCCACAAGGTCAACCAGGTCAAGCGGCTGGCAATTTTGGTGGTCAGAATAACCAGT
TTGCTGGCCAGCCGGCTAACCAAGGTTATCAGCAGCCACAGCAGAATTATCAAGCGCCACAGCAAAGTGCTCCGCAGCAA
GCTTACCAGCAGCCACAGCAGAACTATCAATCTGCTCCTGCCGCGCCAGCTTACCAAGCGCCACAGCAAAGTGCACCGCA
GCAATCTGCGCCAATGCAACAGCGTCCAGCGCCTAAGCCACAAGCCGCGCCAGCTGCTGCACCACAGCAAAACTATACCC
CAGATTTAGATGAGGGTTGGGATGACGATATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Y6IFU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

68.023

76.106

0.518
  ssb Glaesserella parasuis strain SC1401

47.534

98.673

0.469
  ssb Neisseria gonorrhoeae MS11

43.439

97.788

0.425
  ssb Neisseria meningitidis MC58

43.439

97.788

0.425

Multiple sequence alignment