Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FY128_RS05470 Genome accession   NZ_CP048593
Coordinates   1113808..1114383 (-) Length   191 a.a.
NCBI ID   WP_186447874.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens strain But001     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1108808..1119383
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FY128_RS05455 (FY128_05415) gyrA 1108830..1111622 (-) 2793 WP_025593447.1 DNA gyrase subunit A -
  FY128_RS05460 (FY128_05420) - 1111840..1112469 (+) 630 WP_145166293.1 MarC family protein -
  FY128_RS05465 (FY128_05425) - 1112593..1113741 (+) 1149 WP_145166292.1 HPP family protein -
  FY128_RS05470 (FY128_05430) ssb 1113808..1114383 (-) 576 WP_186447874.1 single-stranded DNA-binding protein Machinery gene
  FY128_RS05475 (FY128_05435) uvrA 1114649..1117570 (+) 2922 WP_145166291.1 excinuclease ABC subunit UvrA Machinery gene
  FY128_RS05480 (FY128_05440) - 1117627..1118427 (+) 801 WP_080798523.1 DUF72 domain-containing protein -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 20357.27 Da        Isoelectric Point: 4.7391

>NTDB_id=369613 FY128_RS05470 WP_186447874.1 1113808..1114383(-) (ssb) [Agrobacterium tumefaciens strain But001]
MQLPVTMAGGQDDEMAGSVNKVILIGNVGADPEIRRTQDGRPIANLRIATSETWRDRNSGERKEKTEWHTVVVFNEGLCK
VVEQYVKKGAKLYIEGQLQTRKWQDQTGNDRYSTEVVLQGFNSTLTMLDGRGEGGGGSRSGGDIGGGDYGSGGSNYGGGY
DQQPAARGGASRGGSQPSGGFSSDMDDDIPF

Nucleotide


Download         Length: 576 bp        

>NTDB_id=369613 FY128_RS05470 WP_186447874.1 1113808..1114383(-) (ssb) [Agrobacterium tumefaciens strain But001]
ATGCAATTGCCGGTCACGATGGCTGGCGGACAGGATGACGAGATGGCTGGTAGCGTAAACAAGGTAATTCTGATTGGGAA
CGTTGGCGCCGATCCCGAAATTCGCCGGACGCAGGACGGCCGTCCAATCGCCAATCTGCGTATCGCCACCTCAGAGACGT
GGCGGGACCGCAACAGCGGCGAGCGCAAGGAAAAGACAGAATGGCACACGGTCGTCGTTTTCAACGAAGGCCTGTGCAAG
GTTGTTGAACAATATGTGAAAAAGGGCGCCAAGCTCTATATTGAAGGCCAGCTGCAGACGCGCAAGTGGCAGGACCAGAC
GGGCAACGACCGTTACTCCACCGAAGTGGTACTGCAGGGCTTCAACTCCACGCTGACGATGCTCGACGGTCGCGGCGAAG
GTGGCGGCGGGAGCCGCAGCGGTGGCGACATCGGCGGTGGAGATTATGGCAGCGGCGGCAGTAACTACGGTGGCGGTTAC
GACCAGCAGCCGGCGGCCCGCGGCGGTGCCTCGCGTGGCGGCAGCCAGCCTTCCGGCGGCTTCTCCAGTGACATGGACGA
CGATATCCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(19-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

52.299

91.099

0.476
  ssb Glaesserella parasuis strain SC1401

43.523

100

0.44
  ssb Neisseria gonorrhoeae MS11

39.674

96.335

0.382
  ssb Neisseria meningitidis MC58

39.13

96.335

0.377