Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   FY128_RS05475 Genome accession   NZ_CP048593
Coordinates   1114649..1117570 (+) Length   973 a.a.
NCBI ID   WP_145166291.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens strain But001     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1109649..1122570
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FY128_RS05460 (FY128_05420) - 1111840..1112469 (+) 630 WP_145166293.1 MarC family protein -
  FY128_RS05465 (FY128_05425) - 1112593..1113741 (+) 1149 WP_145166292.1 HPP family protein -
  FY128_RS05470 (FY128_05430) ssb 1113808..1114383 (-) 576 WP_186447874.1 single-stranded DNA-binding protein Machinery gene
  FY128_RS05475 (FY128_05435) uvrA 1114649..1117570 (+) 2922 WP_145166291.1 excinuclease ABC subunit UvrA Machinery gene
  FY128_RS05480 (FY128_05440) - 1117627..1118427 (+) 801 WP_080798523.1 DUF72 domain-containing protein -
  FY128_RS05485 (FY128_05445) dusA 1118433..1119443 (-) 1011 WP_145166289.1 tRNA dihydrouridine(20/20a) synthase DusA -
  FY128_RS05490 (FY128_05450) - 1119582..1120271 (+) 690 WP_003515271.1 fumarylacetoacetate hydrolase family protein -
  FY128_RS05495 (FY128_05455) - 1120309..1120842 (+) 534 WP_013636159.1 gamma carbonic anhydrase family protein -
  FY128_RS05500 (FY128_05460) zur 1120882..1121286 (-) 405 WP_080798510.1 zinc uptake transcriptional repressor Zur -
  FY128_RS05505 (FY128_05465) znuB 1121283..1122101 (-) 819 WP_013636161.1 zinc ABC transporter permease subunit ZnuB -

Sequence

Protein


Download         Length: 973 a.a.        Molecular weight: 107151.18 Da        Isoelectric Point: 6.7160

>NTDB_id=369614 FY128_RS05475 WP_145166291.1 1114649..1117570(+) (uvrA) [Agrobacterium tumefaciens strain But001]
MSELKTISIRGAREHNLKGIDLDLPRNKLIVMTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLEMMQKPDVDRIE
GLSPAISIEQKTTSKNPRSTVGTVTEIYDYMRLLFARVGVPYSPATGLPIESQTVSQMVDRILAFEEGTRLYILAPIVRG
RKGEYKKELAELMKKGFQRVKVDGQFYEIADVPVLDKKYKHDIDVVVDRAVVRADMAARLADSLETCLKLADGLAVAEFA
DKPLPPEETSAGGSANKSLNETHERMLFSEKFACPVSGFTIPEIEPRLFSFNNPFGACPTCDGLGSQQKVDENLIVPEPA
RTLRDGAIAPWAKSSSPYYNQTLEALGKAFGFKLSSKWTDLSKEAQHAILQGTDDKIEFNYQDGARSYKTVKNFEGIVPN
LERRWKETDSAWAREEIERYMSAAPCPACAGYRLKPEALAVKINRMHIGEVTQMSIRMARDWFETLPENLNAKQNEIAVR
ILKEIRERLRFLNDVGLDYLSLSRNSGTLSGGESQRIRLASQIGSGLTGVLYVLDEPSIGLHQRDNARLLDTLKHLRDIG
NTVIVVEHDEDAILTADYVVDIGPAAGIHGGQVIAEGTPQEVMANPKSLTGKYLSGELGVAVPAERRKPKKGREIKVFGA
RGNNLKNVTAAVPLGVFTAVTGVSGGGKSTFLIETLYKSAARRVMGAREIPAEHDRIDGFEFIDKVIDIDQSPIGRTPRS
NPATYTGAFTPIRDWFAGLPEAKARGYAPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVTCDVCHGKRYNRETLDVT
FKGKSIADVLDMTVEEGVEFFAAVPAVRDKLQALFDVGLGYIKVGQQANTLSGGEAQRVKLAKELSKRSTGRTLYILDEP
TTGLHFHDVNKLLEMLQALVDQGNSVVVIEHNLEVIKTADWIIDIGPEGGTGGGEVVATGTPEDIVKNERSYTGHFLKEL
LERRPAGKREAAE

Nucleotide


Download         Length: 2922 bp        

>NTDB_id=369614 FY128_RS05475 WP_145166291.1 1114649..1117570(+) (uvrA) [Agrobacterium tumefaciens strain But001]
ATGAGTGAACTGAAGACGATTTCCATCCGTGGTGCCCGTGAGCATAACCTCAAGGGTATCGATCTGGATCTACCGCGCAA
CAAGCTGATCGTCATGACCGGGCTCTCCGGCTCGGGCAAGTCGTCGCTCGCCTTCGACACAATCTATGCCGAGGGCCAGC
GCCGTTATGTCGAGAGCCTCTCGGCCTATGCGCGCCAGTTCCTCGAAATGATGCAGAAGCCGGATGTAGACCGCATCGAG
GGGCTTTCTCCGGCGATTTCCATCGAGCAGAAAACCACCTCGAAGAACCCGCGCTCTACGGTCGGCACGGTCACGGAAAT
CTACGACTATATGCGCCTGCTGTTTGCGCGTGTCGGTGTGCCCTACTCGCCGGCGACGGGCCTGCCGATCGAGAGCCAGA
CGGTCAGCCAGATGGTCGACCGTATCCTTGCCTTCGAGGAAGGCACGCGCCTTTATATTCTCGCGCCGATCGTGCGCGGC
CGCAAAGGCGAATATAAAAAGGAACTCGCCGAGCTGATGAAGAAGGGCTTCCAGCGCGTCAAGGTGGATGGCCAGTTCTA
CGAGATCGCTGACGTTCCCGTCCTCGACAAAAAGTACAAACACGATATCGATGTGGTGGTAGACCGCGCCGTCGTGCGCG
CGGATATGGCAGCACGCCTTGCCGACAGTCTCGAGACCTGCCTCAAGCTCGCCGACGGGTTGGCAGTGGCCGAATTTGCC
GACAAGCCCCTGCCGCCGGAAGAAACCTCGGCTGGCGGCTCCGCAAACAAATCGCTCAATGAGACCCACGAGCGTATGCT
GTTTTCGGAAAAATTCGCCTGCCCGGTCTCCGGCTTCACCATCCCGGAAATCGAGCCCAGGCTTTTCTCCTTCAACAATC
CCTTCGGCGCCTGCCCCACCTGTGACGGTCTCGGCTCGCAGCAGAAGGTGGACGAAAACCTGATCGTGCCCGAACCTGCA
CGCACCCTGCGGGATGGCGCGATCGCCCCCTGGGCCAAGTCGTCTTCCCCCTATTACAACCAGACGCTGGAGGCACTGGG
CAAGGCCTTCGGTTTCAAGCTGTCGAGCAAATGGACGGACCTTTCGAAAGAGGCGCAGCACGCCATTCTCCAGGGCACTG
ACGACAAGATCGAGTTCAACTATCAGGACGGCGCGCGCTCCTACAAGACGGTGAAGAATTTCGAAGGCATCGTTCCCAAT
CTGGAGCGTCGCTGGAAAGAGACCGACAGCGCCTGGGCGCGCGAGGAAATCGAGCGTTATATGTCGGCAGCCCCCTGCCC
GGCCTGCGCCGGCTATCGCCTGAAGCCGGAAGCGCTCGCCGTCAAGATCAACAGGATGCACATCGGCGAAGTCACCCAGA
TGTCGATCCGTATGGCACGCGACTGGTTCGAGACGCTGCCGGAAAATCTGAACGCCAAACAGAACGAGATCGCGGTTCGC
ATCCTCAAGGAAATCCGCGAACGTCTGCGATTCCTCAACGATGTCGGGCTGGATTATCTCAGCCTGTCACGCAACTCCGG
CACGCTTTCCGGCGGAGAAAGCCAGCGCATCCGGCTTGCTTCGCAGATCGGTTCCGGCCTCACCGGCGTTCTCTATGTTC
TGGATGAGCCGTCCATCGGCCTGCATCAGCGTGACAATGCCCGTCTGCTCGATACGCTGAAACATCTGCGTGATATCGGC
AATACAGTGATCGTGGTCGAACACGACGAGGATGCCATCCTGACGGCGGATTATGTCGTTGATATCGGCCCGGCCGCCGG
CATCCACGGCGGTCAGGTGATCGCCGAAGGCACGCCGCAGGAGGTCATGGCCAATCCGAAATCGCTGACCGGCAAATATC
TATCCGGCGAACTTGGCGTCGCCGTGCCGGCAGAACGCCGCAAGCCCAAGAAGGGCCGCGAAATCAAGGTTTTTGGCGCA
CGCGGCAACAACCTGAAGAATGTGACTGCGGCCGTTCCCCTTGGCGTTTTCACCGCCGTTACCGGCGTGTCGGGTGGTGG
CAAATCCACCTTCCTGATCGAGACGCTCTATAAGTCGGCAGCACGCCGGGTGATGGGCGCGCGCGAAATTCCGGCCGAGC
ATGACCGCATCGATGGTTTCGAATTCATCGACAAGGTGATCGATATCGACCAGTCGCCAATCGGCCGCACGCCACGATCA
AACCCCGCCACCTACACCGGCGCATTCACGCCTATCCGTGACTGGTTCGCCGGTCTGCCGGAGGCAAAGGCGCGAGGTTA
TGCACCTGGCCGTTTCTCCTTCAACGTCAAGGGTGGCCGCTGCGAAGCCTGCCAGGGCGACGGCGTCATCAAGATCGAGA
TGCACTTCCTGCCGGATGTCTATGTCACCTGCGACGTCTGCCACGGCAAGCGTTATAATCGCGAGACGCTGGACGTGACC
TTCAAGGGCAAGTCCATTGCCGACGTGCTTGATATGACGGTGGAAGAAGGCGTTGAATTCTTCGCCGCCGTTCCGGCCGT
GCGTGACAAGCTGCAAGCGCTGTTCGATGTCGGCCTCGGTTACATCAAGGTCGGCCAGCAGGCCAATACGCTCTCCGGCG
GCGAGGCGCAGCGCGTCAAGCTCGCAAAGGAACTGTCAAAACGCTCCACCGGCCGCACGCTCTACATCCTCGATGAACCG
ACGACGGGTCTCCATTTCCACGACGTCAACAAGCTTCTGGAAATGCTGCAGGCGCTGGTGGATCAGGGCAATTCCGTCGT
GGTAATCGAGCACAATCTCGAAGTCATCAAGACGGCCGACTGGATCATCGATATTGGCCCCGAAGGCGGCACGGGCGGCG
GCGAAGTGGTGGCAACCGGAACGCCGGAAGACATCGTCAAGAACGAGCGCTCCTATACCGGTCATTTCCTGAAGGAACTT
CTGGAACGCCGGCCAGCCGGAAAACGCGAGGCTGCGGAGTAA

Domains

Predicted by InterProScan.

UvrA DNA-binding domain (UvrA_DNA-bind)

(311-419)

UvrA interaction domain (UvrA_inter)

(133-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

57.576

98.356

0.566
  uvrA Streptococcus pneumoniae TIGR4

57.576

98.356

0.566
  uvrA Streptococcus pneumoniae D39

57.576

98.356

0.566