Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | FG172_RS23160 | Genome accession | NZ_CP041130 |
| Coordinates | 4815113..4815643 (-) | Length | 176 a.a. |
| NCBI ID | WP_004936793.1 | Uniprot ID | A0AAW6X7L8 |
| Organism | Serratia marcescens strain WVU-007 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 4810113..4820643
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FG172_RS23130 (FG172_23130) | - | 4811175..4811582 (-) | 408 | WP_038874298.1 | VOC family protein | - |
| FG172_RS23135 (FG172_23135) | - | 4811630..4812298 (-) | 669 | WP_049201475.1 | glutathione S-transferase family protein | - |
| FG172_RS23140 (FG172_23140) | - | 4812295..4812738 (-) | 444 | WP_047570370.1 | lipocalin-like domain-containing protein | - |
| FG172_RS23145 (FG172_23145) | - | 4812935..4813195 (+) | 261 | WP_060440954.1 | YdgH/BhsA/McbA-like domain containing protein | - |
| FG172_RS23150 (FG172_23150) | - | 4813251..4814168 (-) | 918 | WP_049201481.1 | LysR family transcriptional regulator | - |
| FG172_RS23155 (FG172_23155) | - | 4814301..4815050 (+) | 750 | WP_141960372.1 | 3-oxoacyl-ACP reductase family protein | - |
| FG172_RS23160 (FG172_23160) | ssb | 4815113..4815643 (-) | 531 | WP_004936793.1 | single-stranded DNA-binding protein SSB1 | Machinery gene |
| FG172_RS23170 (FG172_23170) | uvrA | 4815921..4818749 (+) | 2829 | WP_070913903.1 | excinuclease ABC subunit UvrA | - |
| FG172_RS23175 (FG172_23175) | - | 4819079..4819885 (+) | 807 | WP_204276035.1 | MipA/OmpV family protein | - |
Sequence
Protein
Download Length: 176 a.a. Molecular weight: 18808.71 Da Isoelectric Point: 5.2358
>NTDB_id=369582 FG172_RS23160 WP_004936793.1 4815113..4815643(-) (ssb) [Serratia marcescens strain WVU-007]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGSLQTRKWQDQSGQDRYTTEIVVNVGGTMQMLGGRQGGGAPAGQSAGGQGGWGQPQQPQGGNQFSGGQQQSRPAQNSAP
ATSNEPPMDFDDDIPF
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGSLQTRKWQDQSGQDRYTTEIVVNVGGTMQMLGGRQGGGAPAGQSAGGQGGWGQPQQPQGGNQFSGGQQQSRPAQNSAP
ATSNEPPMDFDDDIPF
Nucleotide
Download Length: 531 bp
>NTDB_id=369582 FG172_RS23160 WP_004936793.1 4815113..4815643(-) (ssb) [Serratia marcescens strain WVU-007]
ATGGCCAGCAGAGGCGTAAACAAAGTAATTCTGGTCGGGAATCTGGGTCAGGATCCAGAAGTCCGTTACATGCCGAACGG
CGGCGCAGTGGCCAACATTACCCTGGCGACCTCCGAAAGCTGGCGTGACAAGGCGACCGGCGAACAGAAAGAGAAGACCG
AGTGGCACCGCGTCGTGCTGTTCGGCAAACTGGCCGAAGTGGCGGGCGAATACCTGCGTAAAGGCTCTCAGGTCTACATC
GAAGGCTCCCTGCAGACCCGTAAATGGCAGGATCAGAGCGGCCAGGATCGCTACACCACCGAGATCGTGGTTAACGTCGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAGGGCGGCGGCGCACCGGCCGGTCAATCTGCCGGCGGCCAGGGCGGTTGGG
GCCAGCCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGCGGCCAGCAGCAGTCTCGCCCGGCGCAGAACAGCGCTCCG
GCAACCAGCAACGAACCGCCAATGGATTTCGACGACGATATCCCGTTCTGA
ATGGCCAGCAGAGGCGTAAACAAAGTAATTCTGGTCGGGAATCTGGGTCAGGATCCAGAAGTCCGTTACATGCCGAACGG
CGGCGCAGTGGCCAACATTACCCTGGCGACCTCCGAAAGCTGGCGTGACAAGGCGACCGGCGAACAGAAAGAGAAGACCG
AGTGGCACCGCGTCGTGCTGTTCGGCAAACTGGCCGAAGTGGCGGGCGAATACCTGCGTAAAGGCTCTCAGGTCTACATC
GAAGGCTCCCTGCAGACCCGTAAATGGCAGGATCAGAGCGGCCAGGATCGCTACACCACCGAGATCGTGGTTAACGTCGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAGGGCGGCGGCGCACCGGCCGGTCAATCTGCCGGCGGCCAGGGCGGTTGGG
GCCAGCCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGCGGCCAGCAGCAGTCTCGCCCGGCGCAGAACAGCGCTCCG
GCAACCAGCAACGAACCGCCAATGGATTTCGACGACGATATCCCGTTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
76.243 |
100 |
0.784 |
| ssb | Glaesserella parasuis strain SC1401 |
59.14 |
100 |
0.625 |
| ssb | Neisseria meningitidis MC58 |
46.591 |
100 |
0.466 |
| ssb | Neisseria gonorrhoeae MS11 |
46.591 |
100 |
0.466 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
36.158 |
100 |
0.364 |