Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FBF84_RS22590 Genome accession   NZ_CP041122
Coordinates   4734292..4734825 (-) Length   177 a.a.
NCBI ID   WP_025304438.1    Uniprot ID   -
Organism   Serratia marcescens strain WVU-001     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4729292..4739825
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FBF84_RS22555 (FBF84_22555) - 4729634..4730041 (-) 408 WP_025304432.1 VOC family protein -
  FBF84_RS22560 (FBF84_22560) - 4730089..4730757 (-) 669 WP_043139706.1 glutathione S-transferase family protein -
  FBF84_RS22565 (FBF84_22565) - 4730754..4731197 (-) 444 WP_025304434.1 lipocalin-like domain-containing protein -
  FBF84_RS22570 (FBF84_22570) bhsA 4731393..4731653 (+) 261 WP_141999048.1 multiple stress resistance protein BhsA -
  FBF84_RS22575 (FBF84_22575) - 4731803..4732552 (+) 750 WP_141999050.1 3-oxoacyl-ACP reductase family protein -
  FBF84_RS22580 (FBF84_22580) - 4732816..4733028 (+) 213 WP_004936800.1 DUF1471 domain-containing protein -
  FBF84_RS22585 (FBF84_22585) - 4733250..4734206 (+) 957 WP_025304437.1 cyclase family protein -
  FBF84_RS22590 (FBF84_22590) ssb 4734292..4734825 (-) 534 WP_025304438.1 single-stranded DNA-binding protein SSB1 Machinery gene
  FBF84_RS22600 (FBF84_22600) uvrA 4735103..4737931 (+) 2829 WP_141999051.1 excinuclease ABC subunit UvrA -
  FBF84_RS22605 (FBF84_22605) - 4738161..4739213 (+) 1053 WP_043139692.1 NAD(P)-dependent alcohol dehydrogenase -
  FBF84_RS22610 (FBF84_22610) maa 4739245..4739802 (-) 558 WP_049204328.1 maltose O-acetyltransferase -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 18754.70 Da        Isoelectric Point: 5.2456

>NTDB_id=369463 FBF84_RS22590 WP_025304438.1 4734292..4734825(-) (ssb) [Serratia marcescens strain WVU-001]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGSLQTRKWTDQSGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGQSAGGQGGWGQPQQPQGGNQFSGGQQQSRPAQSSAP
AASSNEPPMDFDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=369463 FBF84_RS22590 WP_025304438.1 4734292..4734825(-) (ssb) [Serratia marcescens strain WVU-001]
ATGGCCAGCAGAGGCGTAAACAAAGTAATTCTGGTCGGGAATCTGGGTCAGGATCCAGAAGTCCGTTACATGCCGAACGG
CGGCGCAGTGGCCAACATTACCCTGGCGACCTCCGAAAGCTGGCGTGACAAGGCGACCGGCGAACAGAAAGAGAAGACCG
AGTGGCACCGCGTCGTGCTGTTCGGCAAACTGGCCGAAGTGGCGGGCGAATACCTGCGTAAAGGCTCTCAGGTCTACATC
GAAGGCTCCCTGCAGACGCGTAAATGGACCGATCAGTCCGGCGTGGAAAAATACACCACCGAAGTGGTGGTTAACGTTGG
CGGTACCATGCAGATGCTGGGCGGCCGTCAGGGCGGCGGCGCACCGGCCGGTCAATCTGCCGGCGGCCAGGGCGGTTGGG
GCCAGCCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGCGGCCAGCAGCAGTCTCGCCCGGCGCAGAGCAGCGCTCCG
GCGGCCAGCAGCAACGAACCACCAATGGATTTCGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.176

100

0.763
  ssb Glaesserella parasuis strain SC1401

56.684

100

0.599
  ssb Neisseria meningitidis MC58

46.524

100

0.492
  ssb Neisseria gonorrhoeae MS11

46.524

100

0.492

Multiple sequence alignment