Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FY133_RS05940 Genome accession   NZ_CP048564
Coordinates   1189459..1190043 (-) Length   194 a.a.
NCBI ID   WP_003502762.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens strain Gle002     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1184459..1195043
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FY133_RS05925 (FY133_05855) - 1187203..1187832 (+) 630 WP_003502754.1 MarC family protein -
  FY133_RS05930 (FY133_05860) - 1187959..1189107 (+) 1149 WP_129565184.1 HPP family protein -
  FY133_RS05935 (FY133_05865) - 1189162..1189425 (-) 264 WP_223564850.1 hypothetical protein -
  FY133_RS05940 (FY133_05870) ssb 1189459..1190043 (-) 585 WP_003502762.1 single-stranded DNA-binding protein Machinery gene
  FY133_RS05945 (FY133_05875) uvrA 1190308..1193229 (+) 2922 WP_003502764.1 excinuclease ABC subunit UvrA Machinery gene
  FY133_RS05950 (FY133_05880) - 1193286..1194086 (+) 801 WP_003502766.1 DUF72 domain-containing protein -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 20667.59 Da        Isoelectric Point: 4.7391

>NTDB_id=369463 FY133_RS05940 WP_003502762.1 1189459..1190043(-) (ssb) [Agrobacterium tumefaciens strain Gle002]
MQLPVMMAGGQDDEMAGSVNKVILIGNVGADPEIRRTQDGRPIANLRIATSETWRDRNSGERKEKTEWHTVVVFNEGLCK
VVEQYVKKGAKLYIEGQLQTRKWQDQTGNDRYSTEIVLQGFNSTLTMLDGRGEGGGAARSGGGDFGGGNDYGSGGGSSYG
GGYDQQSSSRGGSARGGSQPAGGFSNDMDDDIPF

Nucleotide


Download         Length: 585 bp        

>NTDB_id=369463 FY133_RS05940 WP_003502762.1 1189459..1190043(-) (ssb) [Agrobacterium tumefaciens strain Gle002]
ATGCAATTGCCGGTCATGATGGCCGGCGGACAGGATGACGAGATGGCTGGTAGCGTAAACAAGGTAATTCTGATCGGGAA
CGTGGGCGCTGATCCCGAAATCCGCCGGACGCAGGATGGCCGCCCCATCGCCAACCTGCGCATCGCCACCTCGGAGACCT
GGCGTGACCGCAATAGCGGCGAGCGCAAGGAAAAGACCGAATGGCACACCGTCGTGGTTTTCAACGAAGGCCTGTGCAAG
GTCGTCGAGCAATATGTCAAGAAGGGCGCCAAGCTCTATATCGAAGGCCAGCTGCAGACCCGCAAATGGCAGGACCAGAC
CGGTAACGACCGTTACTCCACCGAAATCGTGCTGCAGGGCTTCAACTCCACGCTGACCATGCTTGACGGTCGCGGCGAGG
GCGGCGGTGCTGCCCGCAGCGGCGGTGGCGATTTCGGCGGCGGCAACGATTATGGCAGCGGCGGCGGCTCCAGCTATGGC
GGCGGTTACGACCAGCAGTCCTCGTCGCGCGGCGGCTCTGCCCGTGGCGGCAGCCAGCCCGCCGGCGGCTTCTCCAATGA
CATGGACGACGACATCCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(19-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

45.178

100

0.459
  ssb Vibrio cholerae strain A1552

49.153

91.237

0.448
  ssb Neisseria meningitidis MC58

39.665

92.268

0.366
  ssb Neisseria gonorrhoeae MS11

39.665

92.268

0.366

Multiple sequence alignment