Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   FY133_RS05945 Genome accession   NZ_CP048564
Coordinates   1190308..1193229 (+) Length   973 a.a.
NCBI ID   WP_003502764.1    Uniprot ID   A0A822UY02
Organism   Agrobacterium tumefaciens strain Gle002     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1185308..1198229
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FY133_RS05925 (FY133_05855) - 1187203..1187832 (+) 630 WP_003502754.1 MarC family protein -
  FY133_RS05930 (FY133_05860) - 1187959..1189107 (+) 1149 WP_129565184.1 HPP family protein -
  FY133_RS05935 (FY133_05865) - 1189162..1189425 (-) 264 WP_223564850.1 hypothetical protein -
  FY133_RS05940 (FY133_05870) ssb 1189459..1190043 (-) 585 WP_003502762.1 single-stranded DNA-binding protein Machinery gene
  FY133_RS05945 (FY133_05875) uvrA 1190308..1193229 (+) 2922 WP_003502764.1 excinuclease ABC subunit UvrA Machinery gene
  FY133_RS05950 (FY133_05880) - 1193286..1194086 (+) 801 WP_003502766.1 DUF72 domain-containing protein -
  FY133_RS05955 (FY133_05885) dusA 1194093..1195103 (-) 1011 WP_003502768.1 tRNA dihydrouridine(20/20a) synthase DusA -
  FY133_RS05960 (FY133_05890) - 1195242..1195931 (+) 690 WP_077998382.1 fumarylacetoacetate hydrolase family protein -
  FY133_RS05965 (FY133_05895) - 1195968..1196501 (+) 534 WP_087744026.1 gamma carbonic anhydrase family protein -
  FY133_RS05970 (FY133_05900) zur 1196538..1196951 (-) 414 WP_003502775.1 zinc uptake transcriptional repressor Zur -
  FY133_RS05975 (FY133_05905) znuB 1196948..1197766 (-) 819 WP_112355685.1 zinc ABC transporter permease subunit ZnuB -

Sequence

Protein


Download         Length: 973 a.a.        Molecular weight: 107011.99 Da        Isoelectric Point: 6.6179

>NTDB_id=369464 FY133_RS05945 WP_003502764.1 1190308..1193229(+) (uvrA) [Agrobacterium tumefaciens strain Gle002]
MSELKTISIRGAREHNLKGIDLDLPRNKLIVMTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLEMMQKPDVDQID
GLSPAISIEQKTTSRNPRSTVGTVTEIYDYMRLLFARVGVPYSPATGLPIESQTVSQMVDRILAFEEGTRLYILAPIVRG
RKGEYKKELADLMKKGFQRVKVDGQFYEIADVPALDKKYKHDIDVVVDRAVVRPDMAARLADSLETCLKLADGLAIAEFA
DKPLPPEETAAGGSANKSLNETHERVLFSEKFACPVSGFTIPEIEPRLFSFNNPFGACPSCDGLGSQQKVDENLIVPEPA
RTLRDGAIAPWAKSSSPYYNQTLEALGKAFGFKLSSKWSDLSKDAQNAILQGTEEKIEFNYQDGARSYKTVKNFEGIVPN
LERRWKETDSAWAREEIERYMSAAPCPACAGYRLKPEALAVKINKLHIGEVTQMSIRMARDWFEVLPENLNAKQNEIAVR
ILKEIRERLRFLNDVGLDYLSLSRNSGTLSGGESQRIRLASQIGSGLTGVLYVLDEPSIGLHQRDNARLLDTLKHLRDIG
NTVIVVEHDEDAILTADYVVDIGPAAGIHGGQVIAEGSPQEVMANPKSLTGKYLSGELGVAVPAERRKPKKGREIKVFGA
RGNNLKNVTAAVPLGVFTAVTGVSGGGKSTFLIETLYKSAARRVMGAREIPAEHDRIDGFEFIDKVIDIDQSPIGRTPRS
NPATYTGAFTPIRDWFAGLPEAKARGYAPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVTCDVCHGKRYNRETLDVT
FKGKSIADVLDMTVEEGVEFFAAVPAVRDKLQSLFDVGLGYIKVGQQANTLSGGEAQRVKLAKELSKRSTGRTLYILDEP
TTGLHFHDVNKLLEMLHALVEQGNSVVVIEHNLEVIKTADWIIDIGPEGGTGGGEVVATGTPEDIVKVERSYTGHFLKEL
LERRPAGKREAAE

Nucleotide


Download         Length: 2922 bp        

>NTDB_id=369464 FY133_RS05945 WP_003502764.1 1190308..1193229(+) (uvrA) [Agrobacterium tumefaciens strain Gle002]
ATGAGTGAACTGAAGACGATTTCCATCCGTGGCGCCCGCGAGCATAACCTCAAGGGCATCGATCTGGATTTGCCGCGCAA
CAAGCTGATCGTCATGACCGGCCTTTCCGGCTCGGGCAAGTCTTCGCTTGCCTTCGATACGATCTATGCCGAAGGCCAGC
GCCGTTATGTCGAAAGCCTCTCGGCCTATGCGCGCCAGTTCCTGGAGATGATGCAGAAGCCGGATGTCGACCAGATCGAC
GGCCTGTCGCCGGCAATCTCCATCGAGCAAAAGACCACCTCGCGCAACCCGCGCTCCACGGTCGGCACGGTCACCGAGAT
CTACGATTATATGCGCCTTCTCTTCGCGCGTGTCGGTGTCCCCTATTCGCCAGCCACCGGCCTGCCGATCGAAAGCCAGA
CTGTCAGCCAGATGGTCGATCGCATTCTCGCTTTCGAGGAAGGTACGCGTCTTTATATTCTTGCGCCGATAGTCCGCGGC
CGCAAAGGCGAATATAAGAAGGAACTCGCCGATCTGATGAAGAAGGGCTTCCAGCGCGTCAAGGTGGATGGCCAGTTCTA
CGAAATCGCCGACGTTCCTGCTCTCGACAAGAAATACAAGCACGACATCGACGTGGTGGTCGATCGCGCCGTCGTGCGCC
CGGACATGGCAGCACGCCTTGCCGACAGTCTCGAGACCTGCCTCAAGCTCGCCGACGGGCTGGCGATTGCGGAATTTGCT
GACAAGCCTTTGCCACCGGAAGAAACCGCCGCTGGCGGCTCCGCCAACAAGTCGCTCAACGAGACCCATGAGCGGGTGCT
GTTTTCGGAAAAATTCGCCTGCCCCGTTTCCGGCTTCACCATTCCGGAAATCGAGCCCCGGCTGTTCTCCTTCAACAACC
CCTTCGGCGCCTGCCCGAGCTGCGATGGCCTTGGCTCGCAGCAGAAGGTGGATGAAAACCTGATCGTTCCGGAACCGGCA
CGAACGCTGCGGGACGGCGCGATAGCTCCCTGGGCCAAATCATCCTCGCCCTATTACAACCAGACGCTGGAAGCACTCGG
CAAGGCCTTCGGTTTCAAACTCTCGAGCAAATGGTCGGACCTTTCGAAGGACGCACAGAACGCCATCCTGCAGGGCACCG
AGGAAAAGATCGAATTCAACTACCAGGACGGCGCCCGCTCCTACAAGACGGTGAAGAATTTCGAAGGCATCGTGCCCAAT
CTGGAGCGTCGCTGGAAAGAGACCGACAGCGCCTGGGCGCGTGAGGAAATCGAACGCTACATGTCGGCGGCCCCCTGCCC
GGCCTGCGCCGGTTATCGCCTGAAGCCGGAAGCGCTCGCCGTCAAGATCAACAAGCTGCATATTGGTGAAGTCACCCAAA
TGTCGATCCGCATGGCGCGCGACTGGTTTGAAGTGCTGCCGGAAAACCTCAACGCCAAGCAGAACGAAATCGCAGTCCGC
ATCCTCAAGGAAATCCGCGAGCGCCTGCGCTTCCTCAATGATGTCGGACTGGATTATCTCAGCCTGTCGCGCAATTCCGG
CACGCTTTCCGGCGGTGAAAGCCAGCGTATCCGTCTGGCCTCGCAGATCGGCTCGGGCCTGACGGGCGTTCTCTATGTTC
TCGACGAGCCGTCAATCGGCCTGCACCAGCGCGACAACGCCCGCCTGCTCGATACGCTGAAACATCTGCGCGATATCGGC
AATACTGTCATCGTGGTCGAACATGACGAAGACGCCATTCTGACGGCCGATTATGTCGTCGATATCGGCCCGGCCGCCGG
CATTCATGGCGGTCAGGTGATTGCCGAAGGATCACCGCAGGAGGTGATGGCCAATCCGAAATCGCTGACCGGCAAATATC
TTTCGGGCGAACTCGGCGTCGCCGTGCCGGCTGAGCGTCGCAAGCCCAAGAAGGGCCGCGAAATCAAGGTGTTTGGCGCG
CGCGGCAACAACCTGAAGAATGTCACGGCAGCTGTGCCGCTCGGTGTTTTCACTGCCGTAACCGGCGTTTCGGGCGGCGG
CAAATCCACATTCCTGATCGAGACGCTTTATAAATCGGCGGCGCGCCGGGTGATGGGTGCGCGCGAAATCCCGGCCGAGC
ACGACCGCATCGATGGTTTCGAATTCATCGACAAGGTGATCGATATCGACCAGTCGCCGATTGGCCGCACGCCGCGTTCC
AACCCGGCCACCTATACCGGTGCGTTCACGCCGATCCGCGACTGGTTCGCCGGTCTGCCGGAAGCCAAGGCGCGCGGTTA
CGCGCCGGGCCGTTTCTCCTTCAACGTCAAGGGCGGCCGCTGCGAGGCCTGCCAGGGCGATGGCGTCATCAAGATCGAGA
TGCACTTCCTGCCTGACGTTTACGTCACCTGCGATGTCTGCCACGGCAAGCGTTATAATCGCGAGACGCTTGACGTCACC
TTCAAGGGCAAATCCATCGCCGACGTGCTGGATATGACGGTGGAGGAAGGCGTGGAATTCTTCGCCGCCGTGCCGGCTGT
GCGCGACAAGCTGCAATCGCTTTTCGATGTCGGCCTCGGTTATATCAAGGTCGGCCAGCAGGCCAATACGCTCTCCGGCG
GCGAAGCGCAGCGCGTCAAGCTCGCCAAGGAACTGTCCAAGCGCTCCACCGGTCGCACGCTCTACATTCTCGACGAGCCG
ACGACCGGCCTGCATTTCCACGATGTCAACAAGCTGCTCGAAATGCTGCATGCGCTTGTGGAACAGGGTAATTCCGTCGT
GGTGATCGAGCACAATCTCGAAGTCATCAAGACGGCGGACTGGATCATCGATATCGGGCCTGAAGGCGGCACGGGCGGCG
GCGAAGTGGTGGCGACCGGTACGCCGGAAGACATCGTGAAAGTCGAGCGTTCCTATACCGGTCACTTCCTGAAGGAGCTT
CTGGAGCGCCGGCCGGCCGGAAAACGGGAGGCTGCGGAGTAA

Domains

Predicted by InterProScan.

UvrA interaction domain (UvrA_inter)

(133-239)

UvrA DNA-binding domain (UvrA_DNA-bind)

(311-419)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A822UY02

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

57.351

98.561

0.565
  uvrA Streptococcus pneumoniae TIGR4

57.351

98.561

0.565
  uvrA Streptococcus pneumoniae D39

57.351

98.561

0.565